XLOC_004519 (bicc1b)


Basic Information

Item Value
gene id XLOC_004519
gene name bicc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7399403 ~ 7429824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009011
ATGGAACAGCTCGATGTGTTCATTAGCGTCAAACCAAAACCCAAGCAGCCTAGCAAGTCGGTGATCGTGAAGAGCGTGGAGAGGAATGCTCTGAATATGTATGAGGCCAGGCGTTATCTGTTGGGTTTGGAGAGCAGTGGTGTATCCGTCCCGAGCACTCTCAGTTGCACTGTCGGCCTCGACATCCTGGCCTCCGCCGGACTCGGTCTTAACAGCCTGGGTCTTTTGGGACCTACAGCCGCATCCATGACAGGACCTGCCACCAACTCTCTTTTGAACGCTCTGAACAGCTCCATCAGCCCATTACAGACACCAGGATCTGGGTCACCCAGCCCCAATCTCTGGCCCAACTCACTGACCAGTCCTGCCAgttTCTCATCACCCCTAATGATCCACCCAGCCACCCCAGCCACTTTGACCAGTATTTTGCTGTCAGGAGTGCCAGGATACACCCAGAACACCCCTTCTCCTCCACCTGGTCTTGCACCCATAGATCCCCAGGTCAACTGCATATCAGACTGCAGTAAAGCCGTGTCTCCACTCAGCACCAAACAGTCCAGCAGCATGTACAGCAGAATGTCTGCAGCATCTCTGGCAGATAAAGTTCTGACCGCAGCTCATGGAGACTCTGTGCAGGAAGCCAGTCCTCACTGTCCTTCTGAACCGCTGTCCAGCAAGTCCAGCCAAGACCAAGGATCAGATACATTCGTGGAGGTAGGCATGCCCCGAAGCCCTTCTCACTCTGGAAACAGCAATGAATTGAAGCAGATGTTGGCGTCCTGTAAGACGACATCAGGGAAGAGGCAAGCTCTGGAGCTGCTACAGGGCACCAAGAACTCCCTGCTACATTCAGAGTGTCTGTTGTCAGACTCCGACTCGAGTGCTTCAGAGAGTCCGGTGGCTGATAAACGTGCTCCAGGCAGTGAGAGAGCCGCTGAACGAGCCGCTCAACAGCACAACTCGGAGCGAATCCGCCTGCCTCCACAGTCCTCCTTTTCTAATATGCAGGCATTCGACTACGAGCAAAAGAAGTTATTGGCGACCAAAGCCATGTTAAAGAAGCCAGTGGTGACAGAGGTCCGAACCCCGACTAACACATGGAGCGGTCTGGGCTTCTCAAAGTCTATGCCTGCAGAAACAATTAAGGAGCTGCGCAGGGCCAACCACGTGTCTTATAAACCCACCATGTCAACTACATACGAGGGGTCTCCTCTCGCACTGTCCCGCTCCAGCAGTAGAGAGGGGGTGGCGAGCGGCAGTGATTCGGATAACTGGAGGGAAAGGAATGGGAGCGGGCTCCCAACACACAGCGACTTTCCCTCCCCTATCAGCCCCAAAAGAAAGCAGAACAAAACAGGTGAGCTCTTGCGCCAGTAA
>TCONS_00009012
TCGGTGATCGTGAAGAGCGTGGAGAGGAATGCTCTGAATATGTATGAGGCCAGGCGTTATCTGTTGGGTTTGGAGAGCAGTGGTGTATCCGTCCCGAGCAGCAGCAGTAACAGCAGCAGTCCTCCATCAGCCCCTCCTCCACCACCAGCTCTCAGTTGCACTGTCGGCCTCGACATCCTGGCCTCCGCCGGACTCGGTCTTAACAGCCTGGGTCTTTTGGGACCTACAGCCGCATCCATGACAGGACCTGCCACCAACTCTCTTTTGAACGCTCTGAACAGCTCCATCAGCCCATTACAGACACCAGGATCTGGGTCACCCAGCCCCAATCTCTGGCCCAACTCACTGACCAGTCCTGCCAGCACACCAGgttTCTCATCACCCCTAATGATCCACCCAGCCACCCCAGCCACTTTGACCAGTATTTTGCTGTCAGGAGTGCCAGGATACACCCAGAACACCCCTTCTCCTCCACCTGGTCTTGCACCCATAGATCCCCAGGTCAACTGCATATCAGACTGCAGTAAAGCCGTGTCTCCACTCAGCACCAAACAGTCCAGCAGCATGTACAGCAGAATGTCTGCAGCATCTCTGGCAGATAAAGTTCTGACCGCAGCTCATGGAGACTCTGTGCAGGAAGCCAGTCCTCACTGTCCTTCTGAACCGCTGTCCAGCAAGTCCAGCCAAGACCAAGGATCAGATACATTCGTGGAGGTAGGCATGCCCCGAAGCCCTTCTCACTCTGGAAACAGCAATGAATTGAAGCAGATGTTGGCGTCCTGTAAGACGACATCAGGGAAGAGGCAAGCTCTGGAGCTGCTACAGGGCACCAAGAACTCCCTGCTACATTCAGAGTGTCTGTTGTCAGACTCCGACTCGAGTGCTTCAGAGAGTCCGGTGGCTGATAAACGTGCTCCAGGCAGTGAGAGAGCCGCTGAACGAGCCGCTCAACAGCACAACTCGGAGCGAATCCGCCTGCCTCCACAGTCCTCCTTTTCTAATATGCAGGCATTCGACTACGAGCAAAAGAAGTTATTGGCGACCAAAGCCATGTTAAAGAAGCCAGTGGTGACAGAGGTCCGAACCCCGACTAACACATGGAGCGGTCTGGGCTTCTCAAAGTCTATGCCTGCAGAAACAATTAAGGAGCTGCGCAGGGCCAACCACGTGTCTTATAAACCCACCATGTCAACTACATACGAGGGGTCTCCTCTCGCACTGTCCCGCTCCAGCAGTAGAGAGGGGGTGGCGAGCGGCAGTGATTCGGATAACTGGAGGGAAAGGAATGGGAGCGGGCTCCCAACACACAGCGACTTTCCCTCCCCTATCAGCCCCAAAAGAAAGCAGAACAAAACAGAGCACTACCTAAGCAGCAGCAACTACATGGACTGCATCTCATCGGTGACGGGAACGAATGGCTGCAACCTCAACACGTCTTTCAAAGGATCTGATCTGCCGGAGCTCTTCAGTAAACTCGGCCTGGGGAAATATACTGACGTCTTCCAGCAGCAGGAGATTGACCTTCAGACGTTCCTCACGCTGACTGATCAGGACCTGAAAGAGCTCGGCATCACTACATTCGGAGCACGCAGGAAAATGCTGCTGGCCATCTCAGAGCTGAACAAGAACCGAAGGAAACTCTTTGAGCCGCCCAACATCCGTTCTTCATTCCTAGACGGAGGCGCCAGTGGTCGACTGCCACGCCAGTTCCACACAGACATTGCCAGTGTGAGCGGGCGCTGGTGA

Function

symbol description
bicc1b Predicted to enable RNA binding activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in diffuse cystic renal dysplasia. Orthologous to human BICC1 (BicC family RNA binding protein 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080522-3 Predicted to enable RNA binding activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in diffuse cystic renal dysplasia. Orthologous to human BICC1 (BicC family RNA binding protein 1).

Ensembl:

ensembl_id ENSDARG00000070497

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009011 False 1377 mRNA 0.54 11 7399403 7423438
TCONS_00009012 True 1746 mRNA 0.55 12 7406318 7429824

Neighbor

gene id symbol gene type direction distance location
XLOC_004518 tfam coding upstream 135445 7254112 ~ 7263958 (+)
XLOC_004517 CU184911.1 coding upstream 691160 6708129 ~ 6708243 (+)
XLOC_004516 dkk1b coding upstream 931728 6465557 ~ 6467675 (+)
XLOC_004515 NA coding upstream 947794 6195170 ~ 6451609 (+)
XLOC_004514 NA coding upstream 1227475 6156963 ~ 6171928 (+)
XLOC_004521 phyhiplb coding downstream 15771 7445595 ~ 7513794 (+)
XLOC_004522 FQ311940.1 coding downstream 131241 7561065 ~ 7561202 (+)
XLOC_004523 CABZ01050061.1 coding downstream 302710 7732534 ~ 7732650 (+)
XLOC_004524 NA coding downstream 369977 7799801 ~ 7841013 (+)
XLOC_004525 BX548028.1 coding downstream 435646 7865470 ~ 7870791 (+)
XLOC_004513 NA non-coding upstream 1246282 6149007 ~ 6153121 (+)
XLOC_004512 NA non-coding upstream 1246824 6144705 ~ 6152579 (+)
XLOC_004527 NA non-coding downstream 613697 8043521 ~ 8046466 (+)
XLOC_004531 NA non-coding downstream 1047623 8477447 ~ 8480465 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location