| Item | Value |
|---|---|
| gene id | XLOC_004515 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 6195170 ~ 6451609 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0048731 | system development | biological_process |
| GO:0099643 | signal release from synapse | biological_process |
| GO:0050877 | nervous system process | biological_process |
| GO:0006906 | vesicle fusion | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0048513 | animal organ development | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0007269 | neurotransmitter secretion | biological_process |
| GO:0001505 | regulation of neurotransmitter levels | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0098916 | anterograde trans-synaptic signaling | biological_process |
| GO:0002088 | lens development in camera-type eye | biological_process |
| GO:0048284 | organelle fusion | biological_process |
| GO:0007600 | sensory perception | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0017156 | calcium-ion regulated exocytosis | biological_process |
| GO:0048880 | sensory system development | biological_process |
| GO:0099536 | synaptic signaling | biological_process |
| GO:0099537 | trans-synaptic signaling | biological_process |
| GO:0009449 | gamma-aminobutyric acid biosynthetic process | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0090174 | organelle membrane fusion | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0006836 | neurotransmitter transport | biological_process |
| GO:0007423 | sensory organ development | biological_process |
| GO:0045055 | regulated exocytosis | biological_process |
| GO:0150063 | visual system development | biological_process |
| GO:0045202 | synapse | cellular_component |
| GO:0099503 | secretory vesicle | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0070382 | exocytic vesicle | cellular_component |
| GO:0005484 | SNAP receptor activity | molecular_function |
| GO:0000149 | SNARE binding | molecular_function |
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0005212 | structural constituent of eye lens | molecular_function |
| GO:0004351 | glutamate decarboxylase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080225-40 | Predicted to enable ATP binding activity; cGMP binding activity; and cGMP-dependent protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including female organism; heart; integument; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in thoracic aortic aneurysm. Orthologous to human PRKG1 (protein kinase cGMP-dependent 1). |
| ensembl_id | ENSDARG00000031702 ENSDARG00000096552 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00010721 | False | 354 | lncRNA | 0.50 | 2 | 6195170 | 6235345 |
| TCONS_00009002 | False | 1923 | mRNA | 0.47 | 18 | 6195191 | 6450836 |
| TCONS_00009001 | False | 2010 | mRNA | 0.47 | 18 | 6195191 | 6450836 |
| TCONS_00009003 | False | 539 | lncRNA | 0.44 | 2 | 6195199 | 6217715 |
| TCONS_00009004 | False | 2055 | mRNA | 0.47 | 18 | 6214041 | 6450836 |
| TCONS_00009005 | False | 2072 | mRNA | 0.42 | 13 | 6391243 | 6451609 |
| TCONS_00009006 | True | 942 | lncRNA | 0.44 | 3 | 6444667 | 6447817 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_004514 | NA | coding | upstream | 23242 | 6156963 ~ 6171928 (+) |
| XLOC_004513 | NA | coding | upstream | 42049 | 6149007 ~ 6153121 (+) |
| XLOC_004512 | NA | coding | upstream | 42591 | 6144705 ~ 6152579 (+) |
| XLOC_004511 | asah2 | coding | upstream | 52497 | 6117682 ~ 6142673 (+) |
| XLOC_004510 | sgms1 | coding | upstream | 80874 | 6065661 ~ 6114296 (+) |
| XLOC_004516 | dkk1b | coding | downstream | 13948 | 6465557 ~ 6467675 (+) |
| XLOC_004517 | CU184911.1 | coding | downstream | 256520 | 6708129 ~ 6708243 (+) |
| XLOC_004518 | tfam | coding | downstream | 802503 | 7254112 ~ 7263958 (+) |
| XLOC_004519 | bicc1b | coding | downstream | 947794 | 7399403 ~ 7429824 (+) |
| XLOC_004520 | FP102277.2 | coding | downstream | 968423 | 7420032 ~ 7420148 (+) |
| XLOC_004497 | AL929469.3 | non-coding | upstream | 1105240 | 5089815 ~ 5089930 (+) |
| XLOC_004495 | AL929469.1 | non-coding | upstream | 1133473 | 5061567 ~ 5061697 (+) |
| XLOC_004522 | FQ311940.1 | non-coding | downstream | 1109456 | 7561065 ~ 7561202 (+) |
| XLOC_004523 | CABZ01050061.1 | non-coding | downstream | 1280925 | 7732534 ~ 7732650 (+) |
| XLOC_004524 | NA | non-coding | downstream | 1348192 | 7799801 ~ 7841013 (+) |