RNA id: TCONS_00009004


Basic Information

Item Value
RNA id TCONS_00009004
length 2055
RNA type mRNA
GC content 0.47
exon number 18
gene id XLOC_004515
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6195170 ~ 6451609 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGCACTTTACGCGATCTCCAGTACGCGTTACAGGAGAAGATTGAAGAATTGAGACAGAGAGACGCGCTTATCGACGAGCTGGAGTTGGAGCTCGACCAGAAAGACGAACTCATACAGAAGCTACAGAATGAGTTAGACAAGTACCGATCCGTGATAAGACCCGCAACTCAACAAGTCCACAAGCAGAGTGCCCTTCAGGAGCACCAGAGGACCAAGAGACAGGCGATCTCAGCCGAACCCACAGCCTTTGATATCCAAGACCTCAGTCACGTCACTCTGCCTTTctacccaaagagtccacaGTCTAAAGAACTAATCAAAGAGGCCATTCTTGACAACGACTTTATGAAGAACCTGGAGCTGTCTCAGATCCAGGAGATTGTAGACTGCATGTACCCTGTGGAGTATGATAAAGAGAGCTGTATCATCAAAGAAGGTGACGTGGGCTCCCTGGTCTATGTCATGGAAGACGGCAAGGTGGAGGTGACCAAGGAGGGCATGAAACTGTGTACCATGGGACCTGGGAAAGTTTTCGGAGAGCTCGCCATTCTATACAACTGCACCAGGACCGCTACGGTACAGACCCTCACAAATGTGAAGTTATGGGCCATTGACCGGCAGTGTTTCCAGACCATCATGATGAGGACAGGACTCATCAAACATGCAGAGTACATGGAGTTCCTGAAGAGCGTTCCCACATTCCAGGGCCTCCAAGAAGAAATCCTCAGCAAGCTGGCTGATGTGCTGGAGGAGACTCACTACAGTGATGGAGAGTACATTATTAGACAAGGTGCCAGAGGGGACACGTTCTTTATCATTAGCAAAGGAAAGGTGAATGTGACTCGAGAAGATGCACCCAATGGGACTCCTGTCTATCTGCGTGCATTAGGAAAAGGAGACTGGTTTGGAGAAAAAGCTCTTCAAGGaGAAGACATCAGGACGGCTAATGTCATCGCTGCTGAAGCAGTTACCTGCCTCGTCATCGACAGAGAatCCTTCAAACACTTGATTGGAGGTCTTGACGACGTCTCAAACAAAGGCTATGATGATGCTGGCGCCAAAGCAAAATACGAGGCGGAGAATGCCTTCTTCTCCAACCTGAAGCTGGTGGACTTTAACATCATCGACACCTTGGGAGTTGGAGGATTTGGGAGAGTTGAGCTGGTGCAGCTCAAGAGTGAAGAGACCAAAACATTTGCAATGAAGATTCTGAAGAAGCGTCACATTGTGGACACGCGACAACAGGAGCACATCCGCTCTGAGAAGCAAATCATGCAGGAGGCACATTCAGACTTCATTGTAAGGTTGTACAGGACTTTCAAAGACAGCAAATACCTGTATATGTTAATGGAGGCCTGTTTAGGAGGAGAGCTTTGGACCATTCTTAGAGACAGAGGATCATTTGAAGACTCCACTACAAGGTTTTACACAGCCTGTGTGGTTGAAGCCTTCGCTTACCTGCATTCCAAAGGAATAATCTACCGGGATTTAAAGCCAGAAAATCTCATTCTGGATCACAGAGGATATGCCAAGCTTGTGGACTTTGGCTTTGCTAAAAAGATTGGATTTGGGAAGAAAACGTGGACTTTCTGTGGAACGCCGGAGTATGTAGCCCCAGAGATCATACTTAATAAAGGCCACGACATCTCTGCAGATTACTGGTCATTGGGAATTCTTATGTATGAACTCTTGACCGGAAGCCCACCGTTTTCAGGACCAGATCCAATGAAGACTTATAATATCATTTTAAGAGGAATCGACATGATAGAATTTCCAAAGAAGATCACCAAAAATGCTGGAAATCTCATTAAAAAACTATGCAGGGACAACCCGTCTGAGCGGTTAGGAAACTTGAAAAATGGAGTGAAAGACATCCAAAAGCACAAATGGTTTGAAGGCTTTAACTGGGAAGGACTGCGGAAAGGAACTCTCATTCCTCCTATTATTCCTGATGTTGCAAGCCCGACTGACACCAGTAACTTTGATAGCTTTCCTGAGGACAACGAGGACCCTCCTCCTGATGACAACTCTGGCTGGGACACTGATTTCTAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0006906 vesicle fusion biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048284 organelle fusion biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0048880 sensory system development biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-080225-40 Predicted to enable ATP binding activity; cGMP binding activity; and cGMP-dependent protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including female organism; heart; integument; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in thoracic aortic aneurysm. Orthologous to human PRKG1 (protein kinase cGMP-dependent 1).

Ensembl:

ensembl_id ENSDART00000179759

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010884 lncRNA upstream 42113 6169582 ~ 6171928 (+) True XLOC_004514
TCONS_00010883 lncRNA upstream 43128 6156963 ~ 6170913 (+) False XLOC_004514
TCONS_00010720 lncRNA upstream 60920 6149007 ~ 6153121 (+) True XLOC_004513
TCONS_00010882 lncRNA upstream 61462 6144705 ~ 6152579 (+) True XLOC_004512
TCONS_00010881 lncRNA upstream 68220 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00010885 lncRNA downstream 1348965 7799801 ~ 7841013 (+) True XLOC_004524
TCONS_00010722 lncRNA downstream 1592685 8043521 ~ 8046466 (+) True XLOC_004527
TCONS_00010887 lncRNA downstream 2026611 8477447 ~ 8480465 (+) False XLOC_004531
TCONS_00010886 lncRNA downstream 2026611 8477447 ~ 8480465 (+) True XLOC_004531
TCONS_00010888 lncRNA downstream 2076732 8527568 ~ 8534915 (+) True XLOC_004532
TCONS_00009000 mRNA upstream 71368 6117682 ~ 6142673 (+) True XLOC_004511
TCONS_00008997 mRNA upstream 99745 6065661 ~ 6114296 (+) False XLOC_004510
TCONS_00008999 mRNA upstream 100698 6102471 ~ 6113343 (+) True XLOC_004510
TCONS_00008998 mRNA upstream 111232 6098713 ~ 6102809 (+) False XLOC_004510
TCONS_00008993 mRNA upstream 165755 6041575 ~ 6048286 (+) False XLOC_004509
TCONS_00009007 mRNA downstream 14721 6465557 ~ 6467419 (+) False XLOC_004516
TCONS_00009008 mRNA downstream 14735 6465571 ~ 6467675 (+) True XLOC_004516
TCONS_00009010 mRNA downstream 803276 7254112 ~ 7263958 (+) True XLOC_004518
TCONS_00009011 mRNA downstream 948567 7399403 ~ 7423438 (+) False XLOC_004519
TCONS_00009012 mRNA downstream 955482 7406318 ~ 7429824 (+) True XLOC_004519
TCONS_00008977 other upstream 1124111 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 1152344 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 1156685 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 1161463 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 1162344 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009009 other downstream 257293 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 969196 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 1110229 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 1281698 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 3683530 10134366 ~ 10145811 (+) False XLOC_004553

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_02325268_02476792.mRNA True 2052 mRNA 0.46 18 CI01000047 2325268 ~ 2476792 (-)