RNA id: TCONS_00010722


Basic Information

Item Value
RNA id TCONS_00010722
length 2074
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_004527
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 8043521 ~ 8046466 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacttttctgacaatatgtaaTAATtGTTACGTTTCCTTTTGAGATTGGTCtatttttttgaaaaacacaATCTCGTGGCAAAACGTAACTtttggatttagtggctaattcgtatgatttaaTTTGCATGTTTAAGTGCAATTTTTTCATCCACCATTGAGGGGTAGGGTTGGGGTTTGGGGCCACACcttttaaaatagtacattttaatttaaatttaattatacaaATTCGTATGATTAGCTACTTTTCTGACAACATGTAAAAATAGATACGCTTCCTTGTGAGATCTGGCTTTTTTAAATGCAATCTTGTggcaatttgtattttaaaattttttaatctAATTCATAGGATTTTATTTGCACATAATAGTTCGATTTTCTCTTCCACAAATAAGAGGCAGGGTTGGGGTAGGGTTTGgggccatgcctccttttaaaaatcgtacattttaaTCATATGAAGTTGTACAAactagccacttttctgacaatatgtaaaGGCTGTTAACAATAGGCTGTTTTTTGCGGAATTAAATATCTGGGGTCTGATTTATAAAAATTAGTTGCGAGAGCTAAAGCTGTTACctataatgaataattaatgtatgtatatgtttcATGGTATGATATTAACGGTGAAGAATGTACTGAAGCTTTGTGTCGGTACATAATGCACTCTTAAAGACggcgacagttttttttttttcttttgaaaaacgcAATCGTGGCGATTTGTAACTGTTGAATTTAGTCGATTTCATTCgcacattttagtacgattttctcATCCATTAACGAGAGGTAGGGTTGGGTTGGTTTTGGGGCTAggcctttttaaaatcgtacattttcatacgaatCAAATCGTACGAATCGGTCACTTTTCTGACAttacataaaatagttacgtttatTCATGAGATCAGGCTAGTTTTTGTGTAATGAAACATCTGGTGTATGATTTATGAAAATAGTTGCGAAAGCTAAAGCTGTGtcctataattaataattaatgtacgTACTGTATGTTTCATGGTACGTTACTACTGGTTAAGAATGTACTACAGCTTTATGTACCGTTACTTAATGCACTCTTACAGTCAGCGAgagttttttgttttgaaaaacgCAATCTTGTGGCAATTTGTAACTTCTggctttagtggctaattcgtatgatgtCGTTCGCACATTTTAGTTTGATTTTCTCATCAACCAATGAAGGGTAGGGTTGGGGGTGGGGTTTGgggccatgcctccttttaaaaaatcttacattttcatacaaagttaatcgtacgaattagccacttttctgacaatacgcAAAAAATAGTTAAGCTTACTTGTAAGATCAGTCTGTTTTTTGCGTAATGAGAAATCTGGGGTCTGATTTATAAAATTTGCATAGAAACATTCCTAAAAGTAAACGTTCAccaaaataaattgtaatttatttattaatgattatggcTCATATGATGATTTGAAGTGGTTCAATTAAGTCGATATTCAAGTTAAATATGTTTATGTGATTACTTGCGCTGCGCACATTCTCCCATCCAATTCGGCTTTTATAGATCACAAATTTTGCATGGGAATTTGCGTATGCAAAAATTGTAACCCTAACCCTACtatttataaatgagacccctgGTTGTTTGTTGATGTATCCGAAATGAAACCAGACAAATGATGTAACTGCCTATTAATAAAGGACGAACGTTCATacttgaagaaaaataaataataatagcgtTTAGTCATCATAGCGTAGATTATCTTTAGTTTAccaaagcaatatatatatatatatatatagatgatcACATGCATAAGATACCATGattgttctttgtttttttctttcagtggTATTGACGAAATCGTTGTTAACTATTGTTAGCTGCTGAAAACCGAATGGctggttcatttggttgttgCTGTCTAAATGCCTTTGATCTTGCTGGTCATTATCTTTAATgttggttgtttgtttatttatgtacttcattaatttattttttaaaaaatggaataTTGTTGAATAAATTATGGATTTTACTTG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0007399 nervous system development biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010885 lncRNA upstream 202508 7799801 ~ 7841013 (+) True XLOC_004524
TCONS_00009006 lncRNA upstream 1595704 6444667 ~ 6447817 (+) True XLOC_004515
TCONS_00010721 lncRNA upstream 1808176 6195170 ~ 6235345 (+) False XLOC_004515
TCONS_00009003 lncRNA upstream 1825806 6195199 ~ 6217715 (+) False XLOC_004515
TCONS_00010884 lncRNA upstream 1871593 6169582 ~ 6171928 (+) True XLOC_004514
TCONS_00010887 lncRNA downstream 430981 8477447 ~ 8480465 (+) False XLOC_004531
TCONS_00010886 lncRNA downstream 430981 8477447 ~ 8480465 (+) True XLOC_004531
TCONS_00010888 lncRNA downstream 481102 8527568 ~ 8534915 (+) True XLOC_004532
TCONS_00010723 lncRNA downstream 510170 8556636 ~ 8557159 (+) True XLOC_004533
TCONS_00009028 lncRNA downstream 523258 8569724 ~ 8574367 (+) True XLOC_004534
TCONS_00009022 mRNA upstream 4426 8003916 ~ 8039095 (+) True XLOC_004526
TCONS_00009021 mRNA upstream 39085 8003872 ~ 8004436 (+) False XLOC_004526
TCONS_00009020 mRNA upstream 172730 7865470 ~ 7870791 (+) True XLOC_004525
TCONS_00009017 mRNA upstream 529727 7497882 ~ 7513794 (+) True XLOC_004521
TCONS_00009014 mRNA upstream 530755 7445595 ~ 7512766 (+) False XLOC_004521
TCONS_00009023 mRNA downstream 27877 8074343 ~ 8104503 (+) True XLOC_004528
TCONS_00009024 mRNA downstream 121806 8168272 ~ 8384349 (+) False XLOC_004529
TCONS_00009025 mRNA downstream 327059 8373525 ~ 8385702 (+) True XLOC_004529
TCONS_00009026 mRNA downstream 428402 8474868 ~ 8476513 (+) True XLOC_004530
TCONS_00009027 mRNA downstream 523219 8569685 ~ 8579727 (+) False XLOC_004534
TCONS_00009019 other upstream 310871 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009018 other upstream 482319 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009013 other upstream 623373 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009009 other upstream 1335278 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00008977 other upstream 2953591 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00009055 other downstream 2087900 10134366 ~ 10145811 (+) False XLOC_004553
TCONS_00009060 other downstream 2164466 10210932 ~ 10211048 (+) True XLOC_004556
TCONS_00009076 other downstream 3597085 11643551 ~ 11643671 (+) True XLOC_004565
TCONS_00009079 other downstream 4566869 12613335 ~ 12613451 (+) True XLOC_004569
TCONS_00009094 other downstream 5237308 13283774 ~ 13292767 (+) True XLOC_004575

Expression Profile

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