RNA id: TCONS_00009134


Basic Information

Item Value
RNA id TCONS_00009134
length 1577
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_004600
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 15666949 ~ 15676285 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCAAATTAAGATAAGCTTCTACACCCATAACCACTGAGCTGACTGATCACAACAATGGCTGCTCCAATGTCCACAAACTCTTTAATGGCTAAGCAGAATGTTCTTGCAGAGAGCTCCGAGGAAAACAAAGAAGCTGAAGGCAAAAAGAAGAAGGCAAAGAAAAACAGGGAGCAGGCATGGGCTAAAGAGGGGCCACGTGACCCCTTTGAAATGCTTGACTCTTTACCCGAGGAGAAGCAACAGGAAATTCAGAAAGCACTGCACCTGTTTTCTTTAGGTCAGGGGCTTCCAAAGAACCTACAAGAGGCTCGTAGACACACATACCGGTTTTGGGATACCCAGCCAGTGCCTAAGATAGATGAAAAAGTGACATCATGTGGGCCAATTGAATCAGAGTGGCCAAAAGTCAGAGAAGAGTCATATTCCCTTCCACAAGGATTTGTTTGGGACACACTTAACCTAACCAACCAGGATCAGCTGAGAGAATTGACGGACTTTCTTAATGAAAACTACATGGAGGAGGAGGTGGAAGATAACAGACCCCGCCCTCACTACTCTCCACAGTTCTTGCTCTGGGCTCTTTGTCCTCCTGGGTGGCAGTCATGTTGGCATTGTGGAGTCAGAGTAGACTCCAATCAGAAACTTGTAGGATTCATAAGTGCTATTCCTGCTACTATTAAAACATTTGATATAGAGTTAAAGATGGTAGAGGCGAACTTCCTGTGCGTGCACAAAAAACTTCGCTCAAAAAGACTGGCACCAGTCCTCATCAAGGAGCTCACTAGACGGGTCCATCAGCTGGGTATATCTCAAGCAGTTTACAGCACCAGTGCGGTCCTGCCAAAGCCTATTGCGAGCTGTAGGTACTGGCACAGATCGTTAAACACACGCAAGCTGATTGAGCTCAATTTTTCTTCTCTCACCCGTAATATGACATTGCAGCGGGCTCTCAAGCTGAATCGGCTTCCTGAGATAACGAAAACCACAGGCCTTCGCCCCATGACTTCACAGGATGTGCCGGTTGTTCATGATCTTCTAAAGGAACATTTCAAAGTTTTCAGTCTGTCTACTGTTCTGACCCTGGAGGATGTTGAGCACTGGCTTCTCCCACAAGATGGTGTTATTGACACTTATGTTGTGGAGAGCATCGATGAGACAGTAACCGACATGGTGAGTTTCTACACACTTTACTCCATGGCTCAGGACCATCAAGTGCATAAAGTCTTGAAGGCAGCCTATGTTGTCTACTGCATCACCAAAGCCACTCCACTTCTGCAGCTAATGGAAGATGTCCTTGTCATTTGTAAAGCAAAGGGGTTTGATGTGTTCTCTGCACTTGACATAATGAACAATAAAGCCTTTTTGGAGCCGCTTAAGTTCAGAATGGGCGATGTACACATGCAGTATTACCTCTACAACTGGAGATGCCCGGATATTACATCCAATAAGGTTGGTTTTTTGCTGAAGTAATGGAAGTTTACATCAAGACAAGAGTGAGCAGTGAAAATACATAAGCAGAAATGTCGCACACATTTGTTACATAATAATACCAGATAAATATTTTGCAACCTTAAA

Function

GO:

id name namespace
GO:0006499 N-terminal protein myristoylation biological_process
GO:0018008 N-terminal peptidyl-glycine N-myristoylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081222-3 Predicted to enable glycylpeptide N-tetradecanoyltransferase activity. Predicted to be involved in N-terminal peptidyl-glycine N-myristoylation. Predicted to act upstream of or within N-terminal protein myristoylation. Predicted to be active in cytoplasm. Is expressed in blood and prechordal plate. Orthologous to human NMT1 (N-myristoyltransferase 1).

Ensembl:

ensembl_id ENSDART00000079803

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009124 lncRNA upstream 488467 15148740 ~ 15178482 (+) False XLOC_004594
TCONS_00010730 lncRNA upstream 551518 15113429 ~ 15115431 (+) False XLOC_004593
TCONS_00010729 lncRNA upstream 551518 15113429 ~ 15115431 (+) True XLOC_004593
TCONS_00010900 lncRNA upstream 551537 15112124 ~ 15115412 (+) False XLOC_004593
TCONS_00010728 lncRNA upstream 552673 15111405 ~ 15114276 (+) False XLOC_004593
TCONS_00010731 lncRNA downstream 227839 15904124 ~ 15925797 (+) True XLOC_004602
TCONS_00010901 lncRNA downstream 271751 15948036 ~ 15948551 (+) True XLOC_004603
TCONS_00010902 lncRNA downstream 540363 16216648 ~ 16229550 (+) False XLOC_004606
TCONS_00010903 lncRNA downstream 540799 16217084 ~ 16229550 (+) False XLOC_004606
TCONS_00010904 lncRNA downstream 541773 16218058 ~ 16229550 (+) True XLOC_004606
TCONS_00009133 mRNA upstream 3537 15622621 ~ 15663412 (+) True XLOC_004599
TCONS_00009131 mRNA upstream 105080 15477111 ~ 15561869 (+) False XLOC_004598
TCONS_00009130 mRNA upstream 111177 15477111 ~ 15555772 (+) False XLOC_004598
TCONS_00009132 mRNA upstream 111177 15487834 ~ 15555772 (+) True XLOC_004598
TCONS_00009128 mRNA upstream 205487 15363463 ~ 15461462 (+) True XLOC_004596
TCONS_00009136 mRNA downstream 14078 15690363 ~ 15823532 (+) False XLOC_004601
TCONS_00009135 mRNA downstream 14078 15690363 ~ 15823532 (+) False XLOC_004601
TCONS_00009137 mRNA downstream 14099 15690384 ~ 15800659 (+) False XLOC_004601
TCONS_00009138 mRNA downstream 14160 15690445 ~ 15771820 (+) True XLOC_004601
TCONS_00009139 mRNA downstream 410792 16087077 ~ 16102422 (+) True XLOC_004604
TCONS_00009129 other upstream 285135 15381694 ~ 15381814 (+) True XLOC_004597
TCONS_00009115 other upstream 1563143 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009106 other upstream 2008805 13658022 ~ 13658144 (+) True XLOC_004581
TCONS_00009101 other upstream 2209593 13457237 ~ 13457356 (+) True XLOC_004579
TCONS_00009094 other upstream 2374182 13283774 ~ 13292767 (+) True XLOC_004575
TCONS_00009153 other downstream 1284408 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009163 other downstream 1669265 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009172 other downstream 2051257 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009175 other downstream 2251586 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009179 other downstream 2449373 18125658 ~ 18125774 (+) True XLOC_004634

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_00188800_00192370.mRNA True 1266 mRNA 0.48 10 CI01000063 188800 ~ 192370 (-)