RNA id: AMCG00002268


Basic Information

Item Value
RNA id AMCG00002268
length 6309
RNA type mRNA
GC content 0.47
exon number 18
gene id AMCG00002268
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9693760 ~ 9725266 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agGAATGAAGGCAACAAAATACCTGCCCAGCTACACATTTAGTTGGTAAAGAGAGATGACATGTTTATGTGTTCGTGGCTGCAGACATGAATGGAGGCTCTGAATATTGTATGTTAAACTGAATGGGTTTCTGTTCCTACAATAAACTaacatcttttctttttacccCTCTCTCTAAAGCTATTGTGAACCCCAAAAACCCAAAGGAACCAGCCAAATCCTTCAGTTTCGACTATTCCTACTGGTCTCACACCTCGGTAGAGGACCCATGCTTTGCCTCGCAGTGTCTGGTGTACAATGACATCGGGAAGGAGATGCTGCAGCATGCCTTCGAAGGCTACAATGTCTGCATATTCGCCTATGGTCAGACCGGGGCGGGAAAGTCCTACACCATGATGGGCAAGCAGGAGGATGGCCAGGAGGGCATCATCCCAATGCTCTGTGAGGATCTCTTTGAGAAAATCAACGACAACAGCAAAGAGGAAATCTCGTACTCCGTGGAGGTCAGCTACATGGAAATCTAttgtgagagagtgagggatTTGCTGAACCCCAAAAATAAAGGCAACCTGCGTGTCCGTGAGCACCCTCTCCTCGGGCCCTACGTGGAAGACCTTTCCAAGTTGGCGGTCACATCCTACACTGACATCGCAGACCTCATGGATGCAGGAAATAAAGCCAGGACTGTGGCAGCGACAAACATGAATGAGACGAGCAGCAGGTCCCACGCCGTGTTCACTATCGTCTTCACGCAGCGGAAGCACGACAGTGAGACAGACCTCTCCACAGAGAAGGTCAGCAAAATCAGCCTGGTGGATCTGGCAGGCAGTGAAAGAGCTGACTCCACGGgAAGGCGCAAATATCAACAAATCTTTGACGACGCTGGGGAAAGTCATCTCTGCTCTGGCCGAAGTTGTGGGAACTCCAGAACCGCTATGGTGGCTGCACTCAGTCCTGCAGATATCAACTATGATGAAACGCTCAGCACCTTAAGATATGCAGACCGGGCCAAACAGATCAAGTGCAATGCTGTCATCAATGAAGACCCCAACGCCAAGCTGGTGCGGGAACTGAAGGAGGAAGTCACACGACTGAAGGACCTTCTGCGTGCGCAGGGCCTGGGagacatcctggacagtaagtgtggggatggggggggagCACAGAACAAGCCAGCGCTGCTGCACAACAAACGCCAACACAGCCAGGCAGGCTTGCAGTCTGTCTCCAGCATTCAGGAGCGTATTATGTCCACTCCGGGAGGAGAAGAGGCCATCGAACGGCTCAAGGAATCAGAGAAGATCATTGCGGAGCTCAATGAGACCTGGGAGGAAAAACTGCGGAAGACAGAAGCAATCCGAATGGAAAGAGAGGCTCTCCTGGCTGAGATGGGTGTGGCAATACGAGAAGACGGGGGGACCCTGGGGGTTTTCTCTCCCAAAAAGACGCCGCACCTGGTGAACTTAAATGAAGATCCTCTGATGTCAGAATGTCTGCTTTATTATATCAAGGATGGGATTACAAGGGTTGGCCAGGCCGACGCCGAGAGACGTCAGGATATTGTTCTGAGTGGGGCGCACATCAAAGAAGAGCACTGCATCTTCAGGAGCGAGAGGAATGCCAACGGGGATGCCCTGCGAGGGGCGCGCGCTGAGCGGGAGAAGACCCCGTCTGCTGAGACGCCCTCGGAACCCGTGGACTGGACCTTTGCCCAGAGGGAGCTGCTAGAGAAGCAGGGCATCGATATGAAGCAGGAGATGGAGAAGAGacTTACAGAGATGGAGATCCTTTATaagaaggagaaagaggaggcCGATCAGCTTCTGGAGCAGCAGAGACTGgATGGAGATTCTGATAGTGGCGATGATTCAGACAAGAGGTCTTGCGAAGAGAGCTGGAGACTAATTACCTCCTTGAGAGAAAAGCTGCCTCCCAGCAAACTGCAAACCATTGTCAAAAAGTGCGGCCTCCCCAGCAGTGGGAAAAAGCGTGAGCCTATAAAAATGTACCAGATCCCCCAGCGCCGGCGCATCACCAAGGACTCCAAGTGGGTCACCATCTCAGACCTCAAGATCCAGGCTGTGAAGGAGATCTGTTACGAAGTGGCTCTCAACGACTTCAGGCACTCCAGGCAGGAAATCGAGGCCCTGGCCATCGTCAAGATGAAGGAGCTGTGCGCCATGTACAGCAAGAAGGACCCCAATGAGCGGGACTCATGGCGCGCCGTGGCGAGGGACGTGTGGGACACCGTGGGCGTGGGGGATGAGCGCATCGAGGACGTGATGACCAATGGGCGGGGCGTCACTGATATGGATGACCTGAAGGTGCACATCGACAAGCTGGAGGACATCCTGCAGGAGGTGAAGAAGCAGAACAACATGAAGGATGAAGAGATCCGTGCACTGAGGAACAAGATGGTCAAAATGGAACGGGTGTTGCCCCTGATCAGCTCCCCAGAGAAGCAGCAGCAGGCAGTGGCCGGCGGAAAGAATGAACTGAGCCACGGcaaggaggagaaagagggtGAGGAAAAGGAGGTGCGTGTGTCCAAGATCATGGGTGAGGACCCTTCTTTTCGCCGGGGCCGCATGCACTGGATGAAGCAGGAGCAGCTGCGCCTCAAGAACCTGCAGCAGCAGGAGATCTCCAAGCAGCTGCGTCGGCAGAGCGGGCCGCACCGCTTCATTCCGCCCGAGGACCGCAAGCTCCGCTTCCCCTTCAAGAGCAACCCAAAGCACCGCAACTCCTGGAGCCCCGGCACGCACATCATCATCACCGACGAGCAGGTCATAGAGCTGAAGGTGCCCAAGGAGGCAGTGGAAGAGGAGAATGGGGATGCTGTCATAGAGGACGAGACCAAGGATCAGAAGCCCAGCGGTGCCCTCCAGGCCAACTCACCGCTGACCGGCACAGCCTCACACGGCAACACGATGGAGCACGACCCCAGCCAGGGCTACATGCAGCACAGCTACAgggtccagcagcagcagcagcaaggcCGCTGGCGCAGCAATTCCGTCAACAGCAGTCAGCAGCGCGGCCTCCAGCACCAGGCGTCGTCTGGCTCCGCCGAGTCTTTGCAGTCCTTGGAGGGGAGGCAGACCCCCCCACACCACAGCTTTCAGCAGCCGAGATACTacaatcagcagcagcagcagcagcagcacccaCAGCACCAGCACCGTCAGCCTTACTACTACAACAGCCCTTACAATGATGCCAGCTTAGCTGGTTTTCAGCACTACACCCAAACTGATCGACCTGGCAATTACAATAACTTTATTGCCCCTCCCCGAATGCGCCGCCAGCTTTCCGCGCCCAACCTCAAAGCCGGCCAGGAAACGACGGTGTGAAACATGACCATGGCAGCGGAGGACAAAGGGATGCGATCCAGAGAAATTAGTCAATGTCACAGCAATaacgaaacaaaaaacataacgACTGCTACAACTATAATTTCTCCTTTTGCACTTCAGCTGAGTGTGTTTGATTATTGGTTGATCCAAACTGAAttacatatgtattaaacaaaaagcacaatttaTATGTTAACGTAGTCCAAACCTTATCCTTTTCTTAGTTCTGCTACACTGGCTGTATTAGTGACTTCAGAGATCATGtagactgtttttgtttttttaaagaaatgattGGGCCTTTTTAGAAAACCACATCCATGCCTTGTTTTGTGATTCAaacaacatttctttttttttttttttttgcattcatgtTTAGAAACATCTAACCCCTAAAGGGGATAGTTCCTTATTCTTTAATATAACtgagaattatttttttcatttatttttgtgccttAATTATAAGTCATGTACtaatcaaaatatgtttttaagcaGGATGAATACATCTATGTAAAGCTCTAGGGAAAATACTCTGGATCTGAAGGGGGGGGGGCATATTTTTTAGAACAGCTGCattatttcatgatttatttgacaaatttaaattaatttcaacagGCACAAAAATATTACCCAATGCTGAAatgatgatgaaaaaaaaaaaaacttgatttaGAAGTGgtattttctaaatatgtttGGATGTCTTCAAGTAAAATGGGCTTTTATGTGTTCCTAGTGGGCTTTATGTAAGTGTGAAGAGGTCAGAGGAAAGTGCTAGAAAGTGACGAGGATGTCTGGTTGCAGAGAATCAGTGCCTTATTGATTTGCTAACACAAATCCATTAACATAATTCTGCATTCAGGTTCAGCTAGAATATTAAATGCCTCTCTTTGCAGTCTTCCTTCCCCTCCTTTCCTTTTCCTCTATTCTCTGTGGAATGCCACACCTAACAGTGGGCACTCTCTGACCCAGCCTTTGTGATCCATAACCCCAGagaatgcttttcattttggtgGATGCTTGGCAAGTTTTGACCCCCTATATACGATGCCAATTGAATACAGACGCAACAGAATCAGAGGTCAGGCATGAGTTCGTTTGTTTCAAAGATTGACGTGACAATGAAATCTGAACTTTGTAACGCAAGTAAATGATGGCAACAAATTATGGCATCTTCCCCCTTTCATTGCAGGTCTGGGATTTAGCCCCTTGAGCGAGTGGTGTGCCTGTGCGTGCACTTAATAGATTGCATCAAACCCCCAAGATCTTTTTTTCACCCAATAAGATTAGCTTTGAATTAACTTGACCTCCTTCACCTCGGCTCccttctttgttgttgttgtattctGGTGTGTAGGCATCCCGCAATCGGAGACCATCAGTCTGTCGAAGGATTCAGCTcacatttactttcatttatACAGCCATTTTAGCAACTGTGATCTACAGTACCTGTGCATCTCCTTCATTTGTGACTGGATTGCCGAGCCATGGGAGCAGCACAGACTCCTGTAGAGTGGGGCTTGTGACAAAGAGCTTATTTCTGAGCATTACATTTTGGTATGCGTCAGCTGAACTCCGAAACAGGGGTCATGTGGACCCAATTAGATACCTAtgcttttgttaattttttcaTTGGTTGCAGTGTTTagcactgaaattaattaagtgCAATGCTTCGGGAATATCTGCTCAGTCTtggcccccccaaaaaaagcaaACCTGGAACAGCTCAGTCTGCAAAAGCAGAAGGCGTGCCGTTTCCATGGCTACACGGTCTGTGTtccagtgcagtgtgtgacGGACGAGTCTCCCCGAGTCTGCAAGATTAGCCTCCGGTTTGTTTCCTGGGATGGAGTTTTCTTGGTTACCTCACAATGTCGAAGTTTCCAAGAAAGGAAGTTAAACATGAGGTTGCCATGgttttaaaataccaattcTAAAGgctttaaaagagagagagagagagagagtgtatttttctgaaaatctgtgttgtttattatttctctttaagcagtattttacattacaaccAATTCCCAGATACTTATCTGAACAATCAGTACACATTGGGTCTTTCCTTCCCTGTTCCATGGTTTATAGATTGCAAAGATAGATAACAATACCAAGCATCTCGACTGATTGTCTGACTTTACTTTAATCTGTATTGCAGACGTTTTCCTCCTTTTTAGAATCTGATCAGCAGTCTCTGTTACATTGTTCACCAAATGCATTTTTGGAGCTTGTATCTTCACACTGCGGAGAAATATATGTTAAACGGATCCAATTCTGAAGGCACAAGGATTGCATGTTGGGAGTGTGTTTTTATAGATCTGTGGGaggacaaaaaaactaaatggttGCAGTTTTCATCATTTACATCTTCAGTGTAACTCAAACCCAGTAGCAGTAACACCTTTGAAGTTCGCATCAGCCAGTTACTCGAAAACAGAACTGCTGCTTTGTTTCAGTATAATGCCAATGTGCCCATTCTAACACCTGCCTGCATgccttttttcaatttttattttctaaatatgcCTTTAGTATACCTCTATTACTCCATTACACATTGGAATATTTAACTGTATGTTATGGTGCTAACAGCTTACTTGCACGCAGTCTGAAATAAGCTGTATAAAATGAAACCTGGACAATGGTTAGCGAGttctttttgaatatatatgtgaGGAAAAATGGTCTTCATTGTACATGTACTTGTTCAATGTTGTACATTTgtggtataaaaacaaaaagaagagaagaacacttaaaatatatttcttagaaATATCAAGTGCTCCCGCAGGGCTTTACATCAGCCTGTCGGGAGCCAGGTGAGTATTCTGTATCACAAGACGACTCGATTGTTCAATAGgactttgctgttgtttttgttgttgtttgtttctttttattgttttttgtttgttttttt

Function

GO:

id name namespace
GO:0008298 intracellular mRNA localization biological_process
GO:0048917 posterior lateral line ganglion development biological_process
GO:0048918 posterior lateral line nerve development biological_process
GO:0048675 axon extension biological_process
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10392 KIF1; kinesin family member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153025 lncRNA downstream 72288 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 79473 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 406173 9283969 ~ 9287587 (-) True G122037
TU152969 lncRNA downstream 480331 9138447 ~ 9213429 (-) True G122019
TU152874 lncRNA downstream 675433 9018126 ~ 9018327 (-) True G121935
TU153107 lncRNA upstream 32159 9757425 ~ 9775995 (-) False AMCG00002275
TU153141 lncRNA upstream 122969 9848235 ~ 9851376 (-) True G122131
TU153259 lncRNA upstream 497947 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 554486 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 1025145 10750411 ~ 10750781 (-) True G122302
AMCG00002269 mRNA downstream 785 9661508 ~ 9692975 (-) True AMCG00002269
AMCG00002270 mRNA downstream 43150 9643246 ~ 9650610 (-) True AMCG00002270
AMCG00002267 mRNA downstream 56494 9630130 ~ 9637266 (-) True AMCG00002267
AMCG00002271 mRNA downstream 64081 9628650 ~ 9629679 (-) True AMCG00002271
AMCG00002265 mRNA downstream 73633 9608750 ~ 9620127 (-) True AMCG00002265
AMCG00002275 mRNA upstream 32347 9757613 ~ 9801108 (-) True AMCG00002275
AMCG00002277 mRNA upstream 77042 9802308 ~ 9807298 (-) True AMCG00002277
AMCG00002276 mRNA upstream 105253 9830519 ~ 9833088 (-) False AMCG00002276
AMCG00002279 mRNA upstream 111652 9836918 ~ 9844326 (-) True AMCG00002279
AMCG00002280 mRNA upstream 252510 9977776 ~ 10006571 (-) True AMCG00002280
TU152605 other downstream 1854349 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5473883 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5907216 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5977508 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 6565816 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 106645 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 116829 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 1799627 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1942489 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2006351 11731617 ~ 11734324 (-) True G122597

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_11715436_11736738.mRNA True 3866 mRNA 0.49 22 CI01000001 11715112 ~ 11736738 (-)