RNA id: AMCG00002461


Basic Information

Item Value
RNA id AMCG00002461
length 7738
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00002461
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15579732 ~ 15606498 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttcctctttcttttttttaacatcttcCAAGTCTCCAAAAAGGGAGTCTGTGCGTTCCTGCTGCACCAGTGACTGTACTCTCCAGCAAGTAGGGGGAAAAccgaggggagaaaaaaaaaacccggACCTTAGCTCTTTCCTGTGACTCCAGTCCTCTAGGAAGGGGCACAAGTCTTCTCCTGAGTCCAGATTTGGGACGTTTTCTctgagaaagaagaagaaaagcagaAGAGGAAAAGCATGGCTCGGGATTGCAGGAGAAGTGGCATGTTCTTACAGTTGTGTGGATGCCTGCTCTGGTTAAACGCCACTTTAGTTCAAGCTGATGGGAGAGTCTTCATCCTGGAGTCGGAGAACGGCTCTGAGGAACTGGACGAGGCGGCTGCGCGGGGGGCCTGTGACGCTCACGGAGCCCGACTGGCCACTTTGGACGAGCTGAAGCGGGCTGTGACACAATGCGCCTTTACCGCCTGCACTCGCGGATGGCTGGCCGGCCCAAACATCGGGACGACAGTGTGTAACAATCTGGGTAATGGTCAGCAGAGAATGAAAGCAGTGGACGTGAAGATTGAAAATGCCACCACAGCCAGCAGCCATCTTGACACCTTCTGTATTAAGGACCAAGGCAAGCCATGTGGAGaccctccttccttccctcaCACCAACCTGCAGGGGCACACTGGCTTCGAGATGGGCGATGAGCTGTTGTATATGTGCGCCCAGGGCTATGTCACTCCAAACGGGGGCAACACCTTCAGCCTGCTGTGCGACAGCTGTGGCGAGTGGTACGGCCTGGTGCAGGCGTGCGTGAAAGCACAGAGTCCTGGCATATCCCCTGACTTCTCACCGACAGAGAAGCAAGATGAGACAGAAGCGCACATCGACTACGAGGACAAGTTCCCTGAAGAACGGCACATGTCATATGGGCATCCCGAAGAGCAAGGGGAGGAGCAGCAGGAGCTGACCTTCAGGCCACACCAGGACCCTGACCAGGACAGGAGGGATGCCGGCAGGGAGGAGCAGTCTGTGGCGGAAGAGGGGATGAGCAGGCCCGAGACAATAGATGAGGAAGGGGTGGAGGACTCCACTGGGAGTGACAGTCAGAAGCCCACCACTCCCACAGAGTCCCCCATGTCCCTGCTGAGTCAGAAACACCTGTTTCCCTCTGAGACCTTGCATGTGACAGAGGGGCTGAAAGAAACAGAGGTGCCGGCCAGGGAGGAAATGGATCCCGTATTTTCGGAGGGGGACAACCACGTCGGGATAAAGACCTATGGCAGACTCACGGAGGTTGGGAAAACCTTTGACGACAGAGAGGACTTCCCCATTGACGTGCCGGCCCGGGAAACACAGAACGACACCAAGGAGGTCACCAAGAGCTCCTTGGACAGCATTGACGAATCCTGGCTGGATGGCCACCCAGTGACGCAGGAGGCAGCTGAGGATGGGAATAAAGTGGATAGCAGCTCCATGGAGACAGAGGATGGGAAGATACCGGGAGTGACTGATCGTCCCAACGATGTGGAGATAAGCCACACAGACACGGCTGGTTCCACCCCCGCCCCCGACTTCACTCAGATACCGGCAGGCCCCACCATGCAGGTTGATCACGCCATTAAGCAAATCCCCATGGAAATAATGCCCACCTCTGCCCCAGAGGACAGGAGCACCAGTAAGAGTGGGGAAGACATGGCCAGGCATTTAACAACCATGTTTTCTGTGATAGCACAGCCAGAACTCACCTCCACCATCACCTCAACCACACTAGAGGGTGCTAACGAGTACCATGAGTTTACAGCAGCTCCGACGGCCTCTTGGGAAACCACCGAAACTTTGTATCCAGTCGTTGACCACATGCCAAGGCCTACAGACACGAATAACATCACCACGTCTTACCAGGACTCCAAAGAAAGCACTACTGGCTCGCTAGATGAGTTAGAAAGAACTGTCCTTTACGATGAGTTCATAGAGAGGAACCTCACTCATGATGCTGGAGCCAAACTCCAGCCCACTGCAGAAACATGTGTGGGGGATAACTGTTCTCAGCCAAGCCGAGGACCCATGATtgccattattattgttgccaTATGCGTGTTGATATTAGCTGCCACACTGGCCATCTGGTGctacaagaaaaaacagcagaaaagcTCTGTTTATAAGATGAATGGGAAGGGACAAACTAGACACCCTCAACAGATCGAAATGCAACAGAAAGTCTAACTGTTGTACAGTATCTACGTTGGGCAAAAAGCCAAACGAAAACAACTCGAGTGGAAGGCTAGAATTGACAGAATTGACTCTCTTCCGAGACAAGAGACATTGtggtacaaaaaatattttgtatgtttgcgaGATTGAtggacttgtttgtttttttgtttgtttcattttttttttttttcatgttgtttgtctgtttctagtttttaaaagtcattgCAGTCCCGGTATGCTGttgccatttgtttgtttagctaTTCCTCATGCTATTTCTGTTCCAGAATTATCTTAATCATTAAGGCTATCCTAAGCAAGTTTACTTTGGTAAATTTACTATTGGGGTTTTGCACTTTTAACCTGGTTTTACTTTAGTTTTTCTATATATTAACAGAGGTTTCCTATGGGTTCAACATGCCTTCAAcgtgctttactacactggaccaTGGGAATATAGTGATACACCATGATGATTATGTCCAATTTACTATAGTAAACCATGGTTTATATATGGCCCAGTCTAGTAAAGCCAGATGAGCTATACTGGCATCAGGGTATCGCACAGTCAATTCTTAAAGCAGCTTGTGCCCATTGCACCAGCCATGTTACTGCTGTTCAATGACTGATATAGCCGAACAAAATGCACAGACTAAAAACATTGGTAAGTTTATATTTAGTGTACagcatggaaatgttttcttataatGCTAAATTGTATTGCCTTTCGTTAGACATAGGCTTAAGAGGTTGATATAGTATATTACTAGGCATTTATCATTGCAGTCCCTAAAATCCCATTTAACAATGTATCAATGTACAAATGGTTTTGgtcaatacatttttcccctGATATGAATGTGTGTGCTGTATTCTGCCAGTATGTTAGTAATCCTTACACTTCCACGTGTAATTTCTTAgtatgaatgaatacataactTTATCAGTATCAATATAGTATGGGGACTACAACTtgagtttattttaacataactATATACTGTCATATCTTTTTGGTTGATTGTTATTTCACAAAGATTTCGGCTAGAACAGAGCCAGTGTTTCAAACAGGTAATGGACAAATCCCTTTGGGCATAAAGCAGGTATGTGGGAATGAAAGAAAAGGCCGCCTGTGTCAGAAGAAAGATATCGCACATGAGTGTGAAGTAGAAAATGCCTGCACATTTAAATTGAGGTTCACAGGCCACACATTACACCGACTCTGAAACAGAGAGAAATCGACATCGACTCACTGAACAGCAATATTGAAAGTCAATTCAAAGCCAAGCAGAGGGGCctttagaaatgaatgaaaaatacatctgagGGTGAGAGTTTGAGCagcaaaaggaaaggaaatataGAGACCTTGATATGaacatttacattgattttcttATGAGAGCAGTGTTTATTGTAACAGCTGTTCATTGTAGATTAATCTTATCCCactgcatacaaatattttaaattataatggcTTGATATTTTGTGAAGAAGGAATATTTAAAGTACGTCATAATTAAGGTCTGAattaatttatacagctgaCTCACTGCATTTTTAAACCGTGATTTAAGAAATCAGTCTTAtcctatgttttttttagtttcaatATGAAGTAtgtatatttagaaaaacaaatagtcaGTAGCTTCCCAGTTGttaattaatgttgtatttgtctttagtgtgtatttttttttgtcttttctagATCAACGACGACTCAAAAGTCTAATGATATTTTTTGGCATaatgatgtttcttttttgctaAATGagtttatatacatgttttgaaGAATTATGACCTTCATCCTaactgtgctttgtgtttgtggatttttgtatatttttcgAAAGCCTTCTAAGCTTGAATGAAAGCGTTAGTTGTAAATGGAAGCTTATACTTAAAAATGGGAGGAAGAGTATTGACTGTCACTGTTCTTGTCTGTAAATTGGCTTTTCTCATTGAATTTGTTTGGAGTTTATTCAGTATTGTAAACCATATCCTTCCAACCATGTGTTTCGAAgagtgtatttcattttcatctccCATGGCAAGcagttttccaaaacatttttgatATTTGATTTAAGAAGTGCCACAGTCAACATCAGTAGCTGTTGATCCTGCAAGTATtcacactgccaggatcaaatgcatctGATGCGAGCGATCCTGATCCATAACAAACTCACCAAGAGGAATATTTGATCTATTTGAGtttcattttccagcaggaTTAAATGCTACACATTAATTTAGTCTTGATTGAAAGTGTCCCTGTTGCGACAAGCTGAGGAAAAAtccagcaaaatgttttttttgcttctttcaTATGAAGttcctttctctttttaaagAGTGGGGCGTCTTGTTCAGTGTCCGAGTTGAGTGCATCGCAGTGCGAggtgtgtaaaatgttttaggGTCATTTTCCTTGCACAGAGAATTTACAGATATTCTGTCATAGTGTATGGGTTGTAACTTCTCTGTCatttttttgggtttgtttttcacatttaaatccAGCATTGTAGATCTGATTTAGCTATGTATATTTGATAacgtacattttgaaatgtttacttgtttctttctttccattttattttctgatgtaGGAATGTGGTCTCCAGCTGgtttgaaaatatgaattacagGAACACCTTAGTTTTGAAGATACAGCTTATGAAAAGCCACTGACAACTGTATGGTGtggttgatttttttgttttgccaacaGTGTtctcattcatgtatttttatatttgattaatgaGTTAAAAAGATGATTGATAAATTATGGTTTCATAGACTGCACAACATCACAAGTGTCAAGAAAAAGTTGGTTACAGATACCAAAGGGAAAATAACAATTGAATCCTTGTGTACAATACTTAGCCACGTGATTTCAGAGAAAGGATAAAAACTGCAAAGattaactgaaatatgttttgtttttgtttgcttgtttcttgtttgtttcttttttattttgccgattttttttatgttttaacaaGACTCATATTCTGTAATTGCTTAATGATTTGTAAACTTCATTCATCAAAATAAACTTCAAAATTACATCTGATGAATAACACACAGAAAAGGAAGGCCTTCAAGATTTTGTGAAACCGATCGGATGTCTTGTcgataagaaaaataacattatttcttacaatttctccatctttctctcaATAAAAAGATATTTGGGGAAGTTGAGGGTACAGCCAAGTGCAGTGAGGGGGCCCAGATATCAAAAGTACTGTCATGTACATTAACCGCCTCCCCTAAACCAGCCTTTGGTGAAATTTTGACCCTGAATAACATtggattttaaaacacaaagagaatGTGAAAGCCAGCATTATTGTCAGTGAAGTTTTCCAGAGCTGCATTAGACAGGGATGTGCAGACAGATGCGAGGTGGACAGGCGTGGGGTTCTGTCCATCTATTGGCTGTGTTTTGAGAGCTGCAGAGAACTGCAGTCTTCCCTCTGCCCCGGTGTTTTCGCAGCCTGCCCGGGAATTCATCCTTCCGACAAAATCAAGGCGCCGCGATCACTCTGCTCGGTGGGTGGGGGTTAAGTGCAGACGCTCCACCGAGTcgagaaaacacaaaacatctgtCGCTGCTTCTCCTCCAGTTTATCAATTGCCTcaattgaaaaaaactcttAGCACTGGCCACCTACTACAGTGTGGTTTGGGCTAGGCTAACGTTTTCCCATCAGAGATTGATTAAATTGGATGAGTTTGGGGATATCCAGTGAACCTGCAGGTTTTCAAGCTGCAAGAAGTAACTGGCCATGTTGTTTTGGTATGTTACTATAACATGGTTTGGGCTGCCTGTGTTTCCCATTTATTCTTACAAACAAACTTCAGACATCTTGAGTCAACAATCAATGTACTATATTTTCACTAGGcacaaaaaaagtgtaattctGACAGGCAGGATCATTCCTCTAACAGGTTTGTTTGCTATGTAACACCCAATTGAAATCTAAAGGTAAATGCATAACCATAACCATTTCCTGTACCTCCCActggtttcttcattaaaaaagaagTCGTCATACGCAACACAGATCCTAACCCCACAAAAACGTCTCTTCTTAAATAGCTGTCTGAATCTGGGATGCTAAAGCTTATCCATGGTTTCTGGTTTCCCTGGTTAGCAGAAAGGACACTAgatattaaagtaatacaaaccAAGTGTATGAATTTATTTCGGCTGCAAATTCATgctctggaaaataaataaataatctcgCCATCTATATTTGTCCTGGGCTGCTTATAAATCCCAGCCCCGCCTACATCCTTCTGCTAACTGTCCCTCACTGACCTTTTTAGTGCGGTTGCTTTGGCTCCGGGATCCTGGCAGCCTGGCCAGAGAGCCAGCTTGGTGGTCATGGGCTGTCTGGTTAATCCCAGGGTCCAAATAGGTGGACGTGTTCCCAGTTACAGGAACTTACagcaagaaaaatatttaaggTTGATTCATCATCATGAGATCAGAGGTgatatattgcattgtttgtcTGGGATGTTCGTGAGTTTTTGGGGGACCGTAAGAACACGTAGTCAGAGACTTTACTCACACTTCTAGAACAACACCTGTTTCACACACCTCTGTGCTTTTTCATCAGTTGTGTACGACTGCTTATCAAACCCGAAAGCTCTGTTACCCCTGAAGTTCTACCGTTTTATATTTCGTTCATTTAACAATTTCTTTCACATTTAATCTGTATGACAATGATCGAAGATTCAGGTTGCACATAAAGTGATCAAAACGGAAAGCACACAAGATGCTCAAATATCGTCCTTCAGGGCAATAGCACCCCAAATGTCATTTGTGACCCCTCATGATGGATAAATCCATCATCTTTAACCTTTTAACTTCAGCCCTGGCCTGGAACCTGCTTCCACAAGAAAGCAGCATATTTCTGCGTGTTATTTGGGTTCCCGACGCTCAAAGGCGTTCTATGGAGTTTATTGAGTCTAAgtcactgatttaaaaaagacacTGCTGTCTGTAGGATGGCAGTCGCCCAAGAACCCAGACAGCCGGACTGAAGGAAGGATTAGTTGTGGGTTTTTCTCATTGCTCTGCTACAAACTGCATCAAGACTCAATgttcaaacattaataaatgagtaaatgtTTTCTCTGGCAAAGCCCTGCCTGCACTGTGAGGAGGATCGGGTTACATCAAAAAATGAATCGAGTTTGGTTCAGCGAACTTAACTAATTCTCTTTAGAGAAATTCTTTATTAGgcagtttgatgcatttaatcaccctgggatttattttatattttcacacattttggtTTACAAAATTGAAactttgtatttggtttaaaaacatcttcaaattgttgaaattataattttgtttctcttgatGTGCAGAGACTTTGGGGGcatcattaaatattgtatgtattttccttCAGCTTAAGTGATATAATAAAATGGGGTGCAACTCTTTAA

Function

GO: NA

KEGG:

id description
K23823 SUSD5; sushi domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154580 lncRNA upstream 239563 15262949 ~ 15340169 (+) False G123295
TU154579 lncRNA upstream 239563 15337588 ~ 15340169 (+) True G123295
TU154466 lncRNA upstream 886956 14691981 ~ 14692776 (+) True G123197
TU154429 lncRNA upstream 1209819 14369093 ~ 14369913 (+) True G123171
TU154427 lncRNA upstream 1213397 14365036 ~ 14366335 (+) True G123169
TU154711 lncRNA downstream 83103 15689601 ~ 15689963 (+) True G123386
TU154713 lncRNA downstream 187910 15794408 ~ 15795149 (+) True G123388
TU154813 lncRNA downstream 879328 16485826 ~ 16489952 (+) True G123468
TU154876 lncRNA downstream 1045044 16651542 ~ 16651964 (+) True G123525
TU154877 lncRNA downstream 1047001 16653499 ~ 16654884 (+) True G123526
AMCG00002459 mRNA upstream 73998 15484471 ~ 15505734 (+) True AMCG00002459
AMCG00002458 mRNA upstream 96076 15434910 ~ 15483656 (+) True AMCG00002458
AMCG00002457 mRNA upstream 174348 15389216 ~ 15405384 (+) True AMCG00002457
AMCG00002456 mRNA upstream 201056 15373006 ~ 15378676 (+) True AMCG00002456
AMCG00002449 mRNA upstream 617361 14951038 ~ 14962371 (+) True AMCG00002449
AMCG00002462 mRNA downstream 10882 15617380 ~ 15623746 (+) True AMCG00002462
AMCG00002465 mRNA downstream 37231 15643729 ~ 15655534 (+) True AMCG00002465
AMCG00002466 mRNA downstream 107757 15714255 ~ 15723162 (+) True AMCG00002466
AMCG00002467 mRNA downstream 191476 15797974 ~ 15821024 (+) True AMCG00002467
AMCG00002468 mRNA downstream 244849 15851347 ~ 15852485 (+) True AMCG00002468
TU154081 other upstream 2450035 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 2518047 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 3439267 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 3743563 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 3885567 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 1351663 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 2308938 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 3225516 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 3523905 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 4667591 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile