RNA id: TU155013


Basic Information

Item Value
RNA id TU155013
length 1423
lncRNA type sense_over
GC content 0.35
exon number 3
gene id AMCG00002496
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16976288 ~ 16985906 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCATTGGTCGGATTGATCTTCTTCCTGAGGTTGCTGTAGACAGGCAAGCCACAGGAATTCATATTGCATTGGAAACCGACTGCGTTTCAGTTATAGATGCTAAGTCTGGCCAATGCTGTAAACGTGCTTTGAACTCTGTCATGTCAAACGAGGGACACTTTTTCTACTTTGCTTACGGTAGTAACCTGCTGAAAGAAAGACTGCGTCTGAAAAACCCGTCGGCACAACTGCACTGCACAGGCAGGGTACAGGCAGGAGGGCATCAGTCTTGGGATTTACAAGCCAATTTACGTGAGGGTGGAAACGGAAGATGAGGAATTGCTCTGTCGATCCTACCAGATGAATAACTTTTTGGCTTCCCTTACTTCACCACAGTACAAGGAGGTCGTGTGCTCAGGTGCGAGACAAAATAATCTACCTCTGGAATACATTAAGAAGCTAGAAGCCATTGAGACCAACAACTACAGTGGCCCTACAATCTTGGATGAAATTAAGGGTTTCCCGTCATAGTCTGTACTTCATAATGGATGACAACTAACATGGAAGTTTAATTACACTTCTTTAATTACAGAAGTTATCTAACCTTAATACCTAAATAGCAGACTTGTGTTTaagttaaaatattgaaatgtaatcaaatgtCCCTGAGgacaaaacatttttggtgACATTCATTATGtcaatattaatttcttagcattGTAACTACCTACAGATATTTGCAGTAATCGTTGATGTGTGTAGTAGTTACATTGGTAATTACAAattgtggtttaaaatgtaattgggagcagggatttaaaaataattctttATTGATGAGCACAATATCACATGAAGTTACATGAAGGTAACTGTTTAATGCTTAAGGCATTATAAtcaattgctttattattttaagggtTTGCAGAGTTCCTGTCTTTATATCAGAGCAGAATTAGACTAGAATAGATTTGTATTGACTGTTTAGAAATGTTCTATTAATAAAGTAATCTTTATGACAGTAAATTAGAATTGAACTGAACTCTACATTATTCAGAATTATTTTACCTTGGatagattattatttaacattcgCTAATGCTTTTGGTGGAAGATATACTTTTGCAATCAGAAGGAAGAGTATAAAATGAATGGGCTTTTAGATGAAGACTAGTACAGCAGACTGAACTGCACAAAGCAAACACTTTCACCAAGCTAGTTAATGGGGAATGTGTTCGTTTAATAAGACAACTGCCCATATATCTTGGAAGAGAATATTAATCTTGAATACCTCATATTATCTGCTTCAGGCAAGCTATTAGACAAATGTATCATACaggactttaaaaaataaaatgcatctttttcaaactgtaatatatatatatatttttatttttgaaatacatgGCTACATTGGGTACATTATGAATtggatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154926 lncRNA upstream 187994 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 325909 16653499 ~ 16654884 (+) True G123526
TU154876 lncRNA upstream 328829 16651542 ~ 16651964 (+) True G123525
TU154813 lncRNA upstream 490841 16485826 ~ 16489952 (+) True G123468
TU154713 lncRNA upstream 1185644 15794408 ~ 15795149 (+) True G123388
TU155044 lncRNA downstream 106071 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA downstream 151509 17137413 ~ 17141435 (+) True G123659
TU155212 lncRNA downstream 709956 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 940795 17926699 ~ 17940633 (+) True G123808
TU155257 lncRNA downstream 1065108 18051012 ~ 18052338 (+) True G123833
AMCG00002500 mRNA upstream 20824 16958243 ~ 16959969 (+) False AMCG00002500
AMCG00002495 mRNA upstream 24223 16937361 ~ 16956570 (+) True AMCG00002495
AMCG00002499 mRNA upstream 47275 16925317 ~ 16933518 (+) True AMCG00002499
AMCG00002493 mRNA upstream 65841 16906745 ~ 16914952 (+) True AMCG00002493
AMCG00002494 mRNA upstream 79881 16856507 ~ 16900912 (+) True AMCG00002494
AMCG00002502 mRNA downstream 1198 16987102 ~ 16992955 (+) True AMCG00002502
AMCG00002501 mRNA downstream 17144 17003048 ~ 17016246 (+) True AMCG00002501
AMCG00002507 mRNA downstream 109832 17095736 ~ 17102119 (+) True AMCG00002507
AMCG00002506 mRNA downstream 121495 17107399 ~ 17136520 (+) True AMCG00002506
AMCG00002513 mRNA downstream 218559 17204463 ~ 17248752 (+) True AMCG00002513
TU154987 other upstream 20711 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 3851096 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 3919108 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4840328 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5144624 11835439 ~ 11836169 (+) True G122582
TU155222 other downstream 929532 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1846110 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2144499 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3288185 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 6082220 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile