RNA id: TU155224


Basic Information

Item Value
RNA id TU155224
length 955
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G123808
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17926699 ~ 17940633 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGGTCAGATagccgctccttctcatccctggcccctaaatggtggaacgaactgcccaccgaagtcaaaacagcagagtccttgacctcattctggcacttactcaagacgcatctttacagacagtacttgtaatattagtccttttatccccgttagatagcacttcacagtttttattatgcttactgcattcttgattgttttcctccttgctccctttcccacaacccctgactgtgaccctacatcttgataGCGCTTAGCTTTCAcggtccaggatgtaggacctcacttactgtacttgtgtaaattgtaaattgtaatttgtaaaatgtattatcttgaattgctatgttttagttaaattgaatttgtaatgattgatgccttgtacttactgtatttttgcacttatgttgtaagtcgccatggataagggcgtctgccaagaaataataataataataataataataataatcctgatAATAGAGCCCTGCGGGGTACAGCACACCTGCACAATCGTAATATTTTCTCCAAAGAATGTGTGTACTTTatggccacactgacaaaagaTCTAATGCAGAAACCAGtgctaaatgtttaaatatacatgttaaatatgtgaTTGTGTTACACAGATAGATTTACACTTTTACCATtgtttaatatgcatatttatccACCCAATGTCCAGTGCATAAACATCATACACTTGGatgtgtactggcttgcaagttaggCAACCGTATATGCCTGTAGCAATATTCCATAAGTATCATCCAGACTTTacctatttgtgtaaatattcataatagcaGACATTTTGTGTTTACACTACAGCCGCTTTGACAACAGTGGCATTTGATACAGGGTTTGTGTCTTAAGTCGTCTTCactaccatatatatataaagagagagagaaataaatgtacatggATTATTGAAA

Function

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155212 lncRNA upstream 166504 17695860 ~ 17760195 (+) True G123797
TU155044 lncRNA upstream 778363 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA upstream 785264 17137413 ~ 17141435 (+) True G123659
TU155013 lncRNA upstream 940795 16980793 ~ 16985904 (+) False AMCG00002496
TU154926 lncRNA upstream 1133900 16792100 ~ 16792799 (+) True G123568
TU155257 lncRNA downstream 110379 18051012 ~ 18052338 (+) True G123833
TU155357 lncRNA downstream 564255 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 566271 18506904 ~ 18509774 (+) False G123916
TU155389 lncRNA downstream 613852 18554485 ~ 18556562 (+) True G123943
TU155399 lncRNA downstream 643536 18584169 ~ 18586027 (+) True G123950
AMCG00002527 mRNA upstream 114972 17806735 ~ 17811727 (+) True AMCG00002527
AMCG00002525 mRNA upstream 251589 17661879 ~ 17675110 (+) True AMCG00002525
AMCG00002526 mRNA upstream 265526 17652475 ~ 17661173 (+) True AMCG00002526
AMCG00002529 mRNA upstream 455407 17445920 ~ 17471292 (+) True AMCG00002529
AMCG00002528 mRNA upstream 510803 17389945 ~ 17415896 (+) True AMCG00002528
AMCG00002535 mRNA downstream 57413 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002534 mRNA downstream 204579 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002540 mRNA downstream 397123 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002546 mRNA downstream 516418 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002553 mRNA downstream 859227 18799860 ~ 18810379 (+) True AMCG00002553
TU154987 other upstream 966617 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 4797002 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 4865014 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 5786234 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 6090530 11835439 ~ 11836169 (+) True G122582
TU155458 other downstream 891381 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 1189770 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 2333456 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 5127491 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 5212015 23152648 ~ 23290535 (+) True G124689

Expression Profile