RNA id: AMCG00002527


Basic Information

Item Value
RNA id AMCG00002527
length 2376
RNA type mRNA
GC content 0.57
exon number 13
gene id AMCG00002527
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17806735 ~ 17811727 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAAACCAGTTGTAGATGctacctttttaaaaattgtttttgcAGCTGATTTGATGGAGCTGGACATGGCCATGGAGCCAGACCGCAAGGCAGCAGTCAGCCATTGGCAGCAACAGTCCTACTTGGACTCTGGCATTCATTCTGGTGCCACAACCACAGCCCCCTCTCTGAGTGGGAAAGGTAACCCTGAAGAAGATGATGTGGACAATCAGGTCCTGTATGAGTGGGAGCAGGGCTTCTCGCAGTCCTTCACACAGGATCAGGTAGCAGACATCGACGGGCAGTATGCCATGACCAGAGCTCAGCGAGTGCGGGCTGCCATGTTCCCAGAGACTCTGGATGAGGGCATGCAGATCCCGTCCACACAGTTCGATGGAGCTCACCCAACAAACGTGCAGCGCCTGGCAGAGCCCTCCCAGATGCTGAAGCACGCAGTGGTGAATCTGATTAACTATCAGGATGATGCCGAGCTGGCAACGCGTGCCATCCCAGAGCTGACCAAACTCTTGAACGATGAGGACCAGGTGGTTGTGAACAAGGCTGCCGTAATGGTTCATCAGCTGTCCAAAAAAGAGGCCTCCCGCCACGCCATCATGCGCTCGCCCCAGATGGTGTCTGCCATCGTGCGCACCATGCAGAACACGAATGACGTGGAGACGGCGCGCTGCACCGCCGGCACGCTGCACAACCTCTCGCACCATCGAGAGGGACTGCTTGCCATCTTCAAGTCGGGCGGGATCCCTGCGCTGGTCAAGATGCTGGGGTCTCCTGTTGACTCTGTACTGTTTTATGCCATCACGACCCTTCACAACCTGCTTCTGCACCAGGAAGGAGCCAAGATGGCAGTTCGCCTGGCTGGGGGCCTTCAGAAAATGGTTGCCTTGCTTAACAAGACAAATGTCAAATTCCTAGCCATCACAACAGATTGCCTTCAGATCTTGGCTTATGGCAACCAGGAGAGCAAGCTCATCATTCTAGCCAGCGGTGGTCCCCAGGCATTAGTCAACATCATGAGGACCTACACGTACGAGAAGCTGCTTTGGACCACCAGTCGTGTGCTGAAAGTGCTTTCCGTCTGCTCAAGCAACAAGCCTGCCATTGTGGAAGCTGGTGGTATGCAGGCACTGGGGCTCCACCTCACAGACCCCAGTCAGCGTCTTGTCCAGAACTGTCTGTGGACACTAAGAAATCTTTCAGATGCTGCAACGAAGCAGGAGGGGATGGAGGGCCTCCTCGGGACTCTGGTTCAGCTCCTGGGCTCTGATGACATCAATGTTGTGACCTGTGCGGCTGGGATCCTCTCCAATCTCACCTGCAACAACTACAAGAACAAGATGATGGTGTGCCAGGTGGGTGGCATCGAGGCCCTGGTGCGCACGGTGCTGCGTGCCGGAGACCGGGAGGACATCACCGAGCCCGCCATCTGTGCCCTACGGCACCTGACGAGCAGACACCAGGATGCAGAGATGGCCCAGAATGCAGTACGCCTTCACTATGGGCTGCCCGTGGTGGTCAAACTGCTGCATCCTCCGTCCCACTGGCCCCTGATCAAGGCCACCGTTGGATTGATCCGCAACTTGGCTCTGTGCCCGGCCAACCACGCTCCCCTGCGTGAACAGGGTGCCATTCCCCGGCTGGTGCAGCTGCTGGTCAGAGCTCACCAAGACACGCAGCGCCGCACCTCCATGGGCGGCACACAGCAGCAGTTTGTGGAGGGTGTGCGTATGGAGGAGATTGTGGAAGGCTGCACTGGAGCGTTGCACATTCTGGCGAGAGACGTCCATAACAGAATCGTCATCCGAGGACTGAACACCATTCCACTCTTCGTTCAGCTGCTGTACTCGCCCATCGAGAACATCCAGAGGGTGGCTGCAGGAGTCTTGTGTGAACTGGCTCAGGACAAGGAAGCGGCAGAAGCCATCGAGGCTGAGGGAGCCACGGCGCCCCTGACCGAGCTGCTGCACTCCAGAAACGAGGGAGTTGCTACCTATGCTGCTGCCGTACTGTTCCGTATGTCTGAGGACAAACCCCAGGACTACAAGAAACGCCTGTCCGTGGAACTCACCAGCTCCCTGTTCAGAACGGAGCCCATGACCTGGAATGAGACTGGAGATCTGGGACTCGACATCGGCGCCCAGGGGGAACCTCTCGGTTACCGTCAGGATGACCCTAGCTACCGTTCCTTCCACTCTGGCGGATATGGGCAGGATGCCATGGGTATGGACCCAATGATGGATCATGACATGGGGGGCCATCACCCTGGTGCTGAGTACCCAGTTGATGGGCTGCCAGACCTGGGACATGCCCAGGACCTGATTGATGGGCTGCCCCCAGGTGATAGCAATCAGCTGGCCTGGTTTGATACTGATCTGTAA

Function

GO: NA

KEGG:

id description
K02105 CTNNB1; catenin beta 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155212 lncRNA upstream 46540 17695860 ~ 17760195 (+) True G123797
TU155044 lncRNA upstream 658399 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA upstream 665300 17137413 ~ 17141435 (+) True G123659
TU155013 lncRNA upstream 820831 16980793 ~ 16985904 (+) False AMCG00002496
TU154926 lncRNA upstream 1013936 16792100 ~ 16792799 (+) True G123568
TU155224 lncRNA downstream 114972 17926699 ~ 17940633 (+) True G123808
TU155257 lncRNA downstream 239285 18051012 ~ 18052338 (+) True G123833
TU155357 lncRNA downstream 693161 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 695177 18506904 ~ 18509774 (+) False G123916
TU155389 lncRNA downstream 742758 18554485 ~ 18556562 (+) True G123943
AMCG00002525 mRNA upstream 131625 17661879 ~ 17675110 (+) True AMCG00002525
AMCG00002526 mRNA upstream 145562 17652475 ~ 17661173 (+) True AMCG00002526
AMCG00002529 mRNA upstream 335443 17445920 ~ 17471292 (+) True AMCG00002529
AMCG00002528 mRNA upstream 390839 17389945 ~ 17415896 (+) True AMCG00002528
AMCG00002511 mRNA upstream 453307 17322635 ~ 17353428 (+) True AMCG00002511
AMCG00002535 mRNA downstream 186319 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002534 mRNA downstream 333485 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002540 mRNA downstream 526029 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002546 mRNA downstream 645324 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002553 mRNA downstream 988133 18799860 ~ 18810379 (+) True AMCG00002553
TU154987 other upstream 846653 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 4677038 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 4745050 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 5666270 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5970566 11835439 ~ 11836169 (+) True G122582
TU155222 other downstream 103709 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1020287 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 1318676 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 2462362 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 5256397 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020474 False 3349 mRNA 0.51 16 NC_007127.7 6182501 ~ 6205790 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_10042324_10051398.mRNA True 3701 mRNA 0.50 14 CI01000016 10042016 ~ 10052367 (+)