RNA id: AMCG00002547


Basic Information

Item Value
RNA id AMCG00002547
length 5506
RNA type mRNA
GC content 0.39
exon number 13
gene id AMCG00002547
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18586078 ~ 18602108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgccatcGTGTTCTCCTGACTGCTGCCTTTTACGGGCCGTGGAGATCATTAAAGTTTTTAGCGAGGACGGCACAGGCAAAGTAGTGGAGATACCAGCAGATATGACAGCACGAGACCTCTGCCAGCTGCTGGTATACAAAAGCCATTGTTTGGACGACAACAGTTGGTCACTTGTTGAACATCACCCTCGTCTTGGACTAGAGAGGTGTTTGGAAGACCATGAACATGTGGTTCAAGTGCAAGCTACAATGACCAGCGAGAGTAAATTTGTGTTCAGGAAGAACTATGCCAAATATGAATTTTTTAAAAACCCTTTGAACTTTTTCCCAGAACAGATGGTTGCGTGGTGTCAGGAATCCAACGGCACAATTCCTCAGTCACAGCTTTTACAGAATTTTTTAAACTCCAGCAGTTGTCCTGAGATTCAGGGTTTCCTGTACGTCAAAGAGCTGGGAAGGAAATCGTGGAAGCGGCTGTATGTGTTTCTGAGACGGTCAGGCCTGTATTGTTCCACCAAAGGAACATCTaagGAGCCAAGACATTTGCAATTATTAGCTGACCTTGAGGACAGCAACATCTTCTCCGTTATAGCAGGCAAGAAGCTGTATAATGCACCAACAGAATATGAATTCTGTATAAAGCCCAATAAATCGAGGAACGAATCCAAGGAGCTCAGGATGTTGTGTGCTGAAGACGAGCAGAGCCGAACTTGCTGGATGACGGCCTTCCGCCTGTTTAAAtatGGAATTTTGCTGTATCAGAACTATAAGATACCCCAGCAGAGGAAAACTTTACTCTCACACTTTTCAACACCAGTGAGGAGTGTGTCGGAAAACTCGCTGGTAGCAATGGATTTCTCAGGAAGAATAGGCCGGGTGATCGAGAACCCAGTGGAGGCTCAGAGTGCGGCCATGGAGGAGGGCCAGGCATGGAGAaaACGAAGTCAGCGGATGAACATCCTGGGCAGTCCCAGTCCCCTGCATCCCTCCTCCCTTAGCACAGTCATTCACAGGACACAGCTGTGGTTTCATGGGCGGATCACACGGGAAGAGTCGCATAAGATGATCATTCAGCAAGGACAAGTGGATGGATTATTCCTTTTAAGGGACAGTCAGAGCAACCCAAAGGCATTTGTTCTCACACTGTGCCATCATCAGAAAATCAAGCATTTCCAGATTTTACCGTGTGAAGAAGATGGACAGATTTTCTTCAGCCTTGATGACGGGAATACCAAATTCACTGACTTGATCCAGCTCGTTGAGTTTTACCAGCTTAACCGTGGAGTCCTGCCCTGCAAACTGAAACATCCCTGCACAATTGTGGCCTTATGACCTTTTACTTGACTTTGCCTAAAAACTTGATTTTTGcaagtcttattttatttttattttttgtgataagCTGCTGAAGATTCTGGATCAGAGACCGGTCTGAGCCCTTCAGCATTCTGTGATTGGGAAACTGAGAAGGATGTGATCAAAAGAGGCAGATActtttaaaacacttatttgCCACCAATCCTTGATCTACTGGCAAACCGAGCACCATCGAACGATCACAATTTGAATGTGTATCTAAAGACCCAAGAGCttgattgtatttctttttttctctctttatcgTTGCATTTCTTGTCCAATCAACTGGAAATGATTATCAAGCTGGGccactgaaagaaaaagaaaaacaagaaagagaatCTTGAATATAATTGGTTTGGAGAAAACTCTTTCCCTGGAATATTCTTGACAAGTTAGATTTAAGCTGATTGTTTActaaaacactttttgtttttagagttttatgttcattttttgcACTCCTGAACTGAAAACAACCAGCCATGGCATTGAGAACGAACGATGCGACATTCTTCCTCTTTGCTCTCCACCTAAAGCTTCTGTGAGAAATCCTTCCCCGTTAATTGGATTATAAGAGAATCTGACCATGAAAACGTCGCAAGCTGAGACTAATCTAAGGGAAGTATTCTACAAATACCCATCACCACATAGCCATGTTAACAACTGTTCCCCAAAGCAGCTGGAATCACAGAGGGGACAGCAGACAAATACAAGGAATATATAAATGTCATTTAAAGAATtctgcaggatttttttttgcttttctttaatgcaACTCAAGGAGTACAACATGTATGCATTCTTGAGGATTGTTTCGCCTAGGTTGtttctgcaaatcatttattcgctgattgtgttttgcatttggaCATTTTCAATGTTGCACAGTAGCTTCAGTTCTTTTTCTATGCTTTGTCCCAATATGTCTGTTATCGAGACCAGGATCGTTCTCCCATTTCAGTCTCATTCCTTGACTTCCACGCAACCTGCCAGCCAGCAAGTTAATTCAATCCTGCTGTTGCTTACTGTGGTAGAAGATGAACAGCATTTTTTGTAACCAAATGGAGGTGACTTAcgaatatcaatatatatataaaaaaaataaaaaataaaaaaagactctTAAATAATATACTATAAATAGATATGTTTTTGAGAAGGGGGGAGCAATTTTCCTGCTTATTGAGTTCCATTGTGTTGCATAACCACTACCCCCCCGTAACGAACAGCAAGACcctcaataaacaaacaaacacaaaaaacagctgATTACGTTGGGAGAGCCAACCTATAACAGTCAGTTGCTTGTCTGTATGGTGTAACTGGAAATCACGTTATTTTCTGCTGCAAAATCCAATCCGAGACGAGTcactttgtatttgtgttattccCTTGATGTATTTTAAGTGGCTGTGTTCACGAATTGTGCACTGTGAAGCCCAGATATAAAGTGGAacgatatttttattttctcattttgttttcagtcttcTCTACGGTAGCTGTAATAGTCCTCAAAGCTTTATAACATATTTCTGgaatggaaaaatattaaaagagcGAGCCCtcttttattatgtatttgtcatACAGCATCTTAATATAAAGCACTATATAGATGAgttacagaataacaacactAACACACTGCTTGTTGAATTtatcacaatttatttaaatgcacacaaaaaaaaaactcaccgatttttttttttaattttttttttaatatatataattgttttttattgatttatttatctggattaaaaaagaaaagacttgaaaacattatttgtcAGGGCTGTTGGTAGCACCATAGGAAGAAGTGTTCTTTTCACTTTAATAAAGTTCATGAAcctcattttttttatatatattaactttCCAACTTTTAGTCATTAGGAAGCAATTTCTCCTTCCTGATCCAACAGAAACACTTCTTCATATTTGTAGCAGATTCTAAAGTGAGTATGTGGATTTAGTAGTCAATGTATTTCGACCACCCAAGGTTAGTGTTTTACAACCTCAGTATTTTTGTTTCGAAAGGAAGTCTTTGTTCTCAAGCCATGACATTTAACCTTTTATTCCTCCATGTATCCTTTAcgtaaattgttttttaatctagtgataaatatgtttaaaaaagaaaaaaagaaaaacagttgcttccaaatgtattcatacccttAACTAAAAGTGGATTTAGCACAGAAAAAAGAATACTGGTGTACagacagtatttgtattattttattttttacaaatgtgaCTATTACAGTTGTATATATTAATagcatataaaaataagaacatttatttcaaaatgcttccccccccccctgttttctaaatatttttttttcatatcctgtaaatatgtttaaaataaatgctgtgagTATAATCCTGCACTGCTTTCTGGTCATCTGGTAGTTTTGCAATCTCTGGAAGTTTGTGGAAGTCACTCTGATTGTTGGGTATAGAAGGAGGctgcacaacaacaaaacccaaACCAATCTTTGTCATCATGGGGGAAGTCTAGGAATTGGCAGATCTTGGTAAGAAGGCCTCAACCTCCACAGGTCATAAATGGCCTCTCCAGTTTTGCTGTAATGTCAATCCTGATGTTCTATACTACGAGGAGTAGCGTACCAGAAAGTTTTACCCAAATATGCGGTTAGAAACGTTGTTCGGAAGGCTAACAGAAATCAAAGGACAATGATGAGGAATGTGGAAGTCCCTGGGACCTTTCCTTCGTTGCCTGCTGCAGGAATGTGGTGTCCAGGGCTGTGGGGGGGAAAGTCTGCTCAAGTGGAAGAAAGAAGAGACTGGATGACATTGAGTTGGACATGTTTTgtggatgtctttttttttttttttttttaagaagaattATTGAGGATTTTGGAGATACTTGGTTGAACGGTAACTGTACGTGTAGCATTACAAGGGTGAAGCTCGTGCTGAAAAGGTCGTTATACAGTCTGGGAAACATCCGTTTAGTTTCAGGGCTGTTTAGCATCCTCAGATTCTGATGCCCTTTGTTATGATTGAGGGATGAGTATTATAGACAAGAAACGTGGGTGCCCCCTGTGCAGAAGCTCATGCTTGGTCACTTTGATTcatgtatttttggttttgctttgttgATGCAGGATAATCATCCGACACACACATCCGAGTATAGAAGCCAAGGATTAAGTGATCTTGAATTAATATTCCTTTCTTGATTGATCATCACAAAGTTCATTGGCAGTCCAGTCCCTTTTTATTGATCAGTAAAATCCTTCCAGGAAGTGCCTTAGCCTATTCAAAGGTAACTGGAAGCACCTTGTCACAGTTATCAAAGCCAAAGGAGGTGAAATAATGATTGCTTAGGTGTGAATAAAAATTGTGCATATAGAAATGTGTGCAACTTTCTTTCAAAGATATGCTATTGATTCATACAATACTTAGTCAAACACGATTTCCGGCACTGAATGTACACCTGCAGTCGTTGCTAAATCAATTTCTAGTTGCACTTTATCACCGGTATGAATATTCATGGAGGCAAGTGTGTTTGTGCGTgcgtgtttgtgtatgtgtatgtgtatatgtaatatacacatacacagtctTTGCTGCAAAAGTTAATATGGAGGTTTGCACGTTTGTGAAATGTAGGCATGTTGGTGTGCTGTAAGACCAATTTATAGTACTGCCACAAAATGCAAGATTGAATTTATCAGCACTTTGAGACCGTTAATCATAATTTAGTTTCAAAGGGAGATGGTGTCACCACAAACATGCTAGATACAGAAAACCAGCATGTAAGTGAGTTTTTGGGGatgttgaaatatttaaagtcacttatgtacatttctgaaaaatactAATTCAATGTAATCAGTGTGAAGCTAAAATATAGTGCCTTGAGCACACTCTATTTAATATAATCTCGCAGGCTAGGTTTGGTTTGCCCTCTGTTTGTTGTGCCAGTGCCATTTTCTCAGCAGCACAAATCCCTTCACACTGTCTGACGTCCTTCGATACGAAGCAGCGATGCTGTTCTGCTTGGGTTGCATCCATAGCTTTATTTTGTTCAAGGAAATCTTCATTAGACtcatatatgatatatatatatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K20064 GRB10; growth factor receptor-bound protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155412 lncRNA downstream 148 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 116471 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 379946 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 533746 18051097 ~ 18052332 (-) True G123845
TU155254 lncRNA downstream 591315 17933464 ~ 17994763 (-) True AMCG00002533
TU155446 lncRNA upstream 180037 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 681770 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 1699964 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1938199 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 2376989 20979097 ~ 21116735 (-) True G124327
AMCG00002550 mRNA downstream 13096 18554798 ~ 18572982 (-) True AMCG00002550
AMCG00002549 mRNA downstream 41003 18528653 ~ 18545075 (-) True AMCG00002549
AMCG00002545 mRNA downstream 77408 18504897 ~ 18508670 (-) True AMCG00002545
AMCG00002544 mRNA downstream 93898 18482733 ~ 18492180 (-) True AMCG00002544
AMCG00002543 mRNA downstream 158740 18426724 ~ 18427338 (-) True AMCG00002543
AMCG00002552 mRNA upstream 27541 18629649 ~ 18632830 (-) True AMCG00002552
AMCG00002548 mRNA upstream 99787 18701895 ~ 18713091 (-) True AMCG00002548
AMCG00002551 mRNA upstream 121289 18723397 ~ 18759586 (-) True AMCG00002551
AMCG00002557 mRNA upstream 184012 18786120 ~ 18786641 (-) True AMCG00002557
AMCG00002556 mRNA upstream 184565 18786673 ~ 18786954 (-) True AMCG00002556
TU155250 other downstream 596613 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1746356 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3639767 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4931842 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 5556672 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 4483886 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4579813 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 5659457 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 5689679 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 7701774 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020524 False 5586 mRNA 0.42 17 NC_007127.7 8364085 ~ 8520474 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_11034620_11091604.mRNA True 1632 mRNA 0.48 14 CI01000016 11034620 ~ 11091604 (-)