RNA id: AMCG00003541


Basic Information

Item Value
RNA id AMCG00003541
length 2124
RNA type mRNA
GC content 0.50
exon number 21
gene id AMCG00003541
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8900456 ~ 8941751 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCTTATTCTTTTCCATGAGAGGAAAGGGCCTTTCTACTCAGGCTCACAAAGCTCTGGACGTGGACCGGAGTGTCCTGTACAAGATGAAGAAGTCAGTGAAGGCCATTTACACTTCAGGTCTGGcGCACGTGGAGAACGAGGAGCAATACACCCAGGCTCTGGAAAAATTTGGCGAGAACTGTGTCTACCGAGATGACCCAGATTTGGGATCAGCCTTCCTCAAGTTCTCGGTGTTCACGAAAGAGCTGACCGCACTCTTCAAAAACTTGtttcagaataTGAACAATATCATCACCTTTCCACTTGATAGTCTTTTGAAAGGCGACTTGAAAGGTGTAAAAGGCGATCTGAAAAAGCCTTTTGACAAGGCCTGGAAAGACTATGAAACCAAAGTtACGAAGAttgagaaggagaagaaggagcaTGCGCGACAGCACGGAATGATACGCACGGAGATTAGCGGAGCGGAGATTGCGGAGGAGATGGAAAAAGAGAGACGTTTTTTTCAGTTGCAGATGTGTGAGtaTCTCCTCAAAGTTAACGAGATCAAAATCAAGAAGGGTGTGGACTTGCTCCAGAACCTCATTAAGTATTTCCATGCCCAGTGCAATTTCTTTCAGGATGGGCTGAAGGCAGTGGAGAACCTTAAACCCTCAATCGAAAAGCTAGCTACAGATTTGCACACGATAAAGCAGGCCCAGGATGAGGAGAGGAAGCAGCTCACCCAGTTGAGAGATGTGTTGAAGTCTTCACTGCAGGTGGAACAGAAGGAGGATTCTCAGGTGCGTCAGAGCACTGCCTACAGTCTGCACCAGCCCCAGGGGAACAAGGAGCACGGCACGGAGCGCAGCGGGAATCTGTACAAGAAGAGTGACGGGTGGGTGTCCCGACTAAGATTGCTCAGAAAGGTGTGGCAGAAGAGAAAATGCTCAGTGAAAAACGGATATCTTACTATATCTCATGGAACGGCTAACAGACCACCAGCAAAGCTCAATCTATTAACCTGTCAAGTGAAACGCAACCCAGATGAGAAAAAAAGCTTTGATCTCATATCACATGACAGGACCTATCACTTTCAAGCAGAAGATGAACCTGAATGTCAAATATGGATTTCGGTCCTCCAGAACAGTAAGGAGGAGGCTCTGAACAACGCCTTCAAGGGGGACCAACATGTGGGAGAGAACAACATCGTCCAGGAGCTGACCAAAGCCATTTTGTCCGAAGTGAAGAGGATGACTGGGAACGATGTGTGCTGTGACTGCGGGGCACAGAATCCCACGTGGCTGTCCACCAATCTTGGAATCGTGACGTGTATCGAATGCTCTGGAATCCACAGAGAACTCGGCGTGCACTACTCCCGAATACAGTCCCTCACCCTGGATGTCTTGGGAACATCTGAGCTCTTGCTGGCCAAGAACGTCGGGAACGCTGGCTTCAATGAGATCATGGAAGCCAATCTGTGTGCAGAGGACCTGGTCAAACCTAACCCCACCAGCGACATGCAGGCACGAAAGGACTACATCACAGCCAAGTACACCGAGAGGAAATTTGCTAGGAAGAAGTGCATCGACAATGCCGCCAAGCTGCAGAGTCTGTGTGAAGCCGTGAAGGCCAGGGATATCTTCTCTCTGATTCAAGTGTATGCAGACGGTGTGGATCTGATGGAGCCCATTCCACTGGCAAACGGACACgagcagggcgAGACCGCACTTCACCTGGCCGTCCGACTGGTGGACCGGACTCAAAGCTGCTCTTGCTCACCACAGCCTGGACGTTTGTTTCACAGTGGCAATCTGGATAAGCAGACCACGAAAGGCAGCACTGCCCTGCACTACTGCTGCCTAACGGACAACGTGGAGTGCCTCAAACTGCTGCTGAGAGGGAAGGCGTCCATTGACATTGCCAACGAATCGGGAGAGACCCCTCTTGACATCGCCAAAAGACTAAAGCACACGCAGTGTGAGGAGCTGCTCAGTCAGGCGTTGTCTGGGAAGTTCAACGCTCACGTCCACGTGGAATATGAGTGGAGGTTACACCACGAGGATCTGGATGAGAGCGACGAAGACATGGAGGAGAAGGTGAGTGTGTCCCACTGTGCTTGTGTCACTCAGGAAAAGTGA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12488 ASAP; Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1613 lncRNA upstream 56374 8843827 ~ 8844082 (+) True G1375
TU1577 lncRNA upstream 199902 8699466 ~ 8700554 (+) True G1347
TU1573 lncRNA upstream 233529 8661032 ~ 8666927 (+) True G1343
TU1531 lncRNA upstream 456432 8443740 ~ 8444024 (+) True G1303
TU1519 lncRNA upstream 559864 8340266 ~ 8340592 (+) True G1291
TU1675 lncRNA downstream 67619 9009297 ~ 9022573 (+) True G1430
TU1676 lncRNA downstream 67619 9009297 ~ 9027632 (+) False G1430
TU1677 lncRNA downstream 67619 9009297 ~ 9020218 (+) False G1430
TU1701 lncRNA downstream 158940 9100618 ~ 9106764 (+) False AMCG00003544
TU1863 lncRNA downstream 758879 9700557 ~ 9703478 (+) True G1574
AMCG00003535 mRNA upstream 58037 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003534 mRNA upstream 247986 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003533 mRNA upstream 562806 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 608238 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003530 mRNA upstream 920259 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003542 mRNA downstream 16463 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003539 mRNA downstream 24033 8965711 ~ 8977843 (+) True AMCG00003539
AMCG00003540 mRNA downstream 37922 8979600 ~ 8982021 (+) True AMCG00003540
AMCG00003544 mRNA downstream 134212 9075890 ~ 9106765 (+) True AMCG00003544
AMCG00003545 mRNA downstream 168163 9109841 ~ 9131160 (+) True AMCG00003545
TU1569 other upstream 248052 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 2405551 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 314150 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 835830 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2548507 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2632053 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 4095759 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034604 True 4876 mRNA 0.45 28 NC_007131.7 29634653 ~ 29675458 (+)