RNA id: AMCG00003542


Basic Information

Item Value
RNA id AMCG00003542
length 372
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00003542
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8958141 ~ 8959534 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCAGGACTCTACAGGAACCTCTGGACTTCATTAACTATATAGATGTGGCACAGCAAGATGGAAAGCTGCCATTTGTGCCAACAGAAGAGGAAGTGATCTTGGCAGTCTCGAAGTACGGAGTGAAGGTGGTCTCAGTGGATCAGTGCGATGTGCTGCACCGCCACCCTCTATACCTGATCGTACGCATGCTGTGCTACGACGATGGCCTGGGAGCCGGGAAAAACCTCCTGGCATTGAAAACGACTGATCCTAAGCAGCAGGAGTGCCATATCTGGGTGTACCAGTGCAGCAACTCGGATCAAGCACAAACCATCTGTAAGATGCTGTCCGCAGCCTTCGACTCCGTTCTGACATCAGAGAAATCTTGA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process

KEGG:

id description
K20058 ITGB1BP1; integrin beta-1-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1625 lncRNA upstream 16390 8940151 ~ 8941751 (+) False AMCG00003541
TU1613 lncRNA upstream 114059 8843827 ~ 8844082 (+) True G1375
TU1577 lncRNA upstream 257587 8699466 ~ 8700554 (+) True G1347
TU1573 lncRNA upstream 291214 8661032 ~ 8666927 (+) True G1343
TU1531 lncRNA upstream 514117 8443740 ~ 8444024 (+) True G1303
TU1675 lncRNA downstream 49763 9009297 ~ 9022573 (+) True G1430
TU1676 lncRNA downstream 49763 9009297 ~ 9027632 (+) False G1430
TU1677 lncRNA downstream 49763 9009297 ~ 9020218 (+) False G1430
TU1701 lncRNA downstream 141084 9100618 ~ 9106764 (+) False AMCG00003544
TU1863 lncRNA downstream 741023 9700557 ~ 9703478 (+) True G1574
AMCG00003541 mRNA upstream 16463 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003535 mRNA upstream 115722 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003534 mRNA upstream 305671 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003533 mRNA upstream 620491 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 665923 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003539 mRNA downstream 6177 8965711 ~ 8977843 (+) True AMCG00003539
AMCG00003540 mRNA downstream 20066 8979600 ~ 8982021 (+) True AMCG00003540
AMCG00003544 mRNA downstream 116356 9075890 ~ 9106765 (+) True AMCG00003544
AMCG00003545 mRNA downstream 150307 9109841 ~ 9131160 (+) True AMCG00003545
AMCG00003543 mRNA downstream 181010 9140544 ~ 9144958 (+) True AMCG00003543
TU1569 other upstream 305737 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 2463236 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 296294 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 817974 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2530651 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2614197 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 4077903 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile