RNA id: TU10899


Basic Information

Item Value
RNA id TU10899
length 290
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G8816
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52532729 ~ 52533018 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTTGgtccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggccataatgttatggctgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10894 lncRNA upstream 163253 52369093 ~ 52369476 (+) True G8811
TU10891 lncRNA upstream 263922 52268600 ~ 52268807 (+) True G8808
TU10851 lncRNA upstream 364189 52168316 ~ 52168540 (+) True G8775
TU10839 lncRNA upstream 441438 52090885 ~ 52091291 (+) True G8764
TU10683 lncRNA upstream 869305 51645849 ~ 51663424 (+) True G8658
TU10900 lncRNA downstream 20903 52553921 ~ 52554379 (+) True G8817
TU10922 lncRNA downstream 83518 52616536 ~ 52616852 (+) True G8835
TU10923 lncRNA downstream 86457 52619475 ~ 52622266 (+) True G8836
TU11001 lncRNA downstream 306430 52839448 ~ 52902782 (+) True G8900
TU11108 lncRNA downstream 573726 53106744 ~ 53106997 (+) True G8982
AMCG00004516 mRNA upstream 282362 52249138 ~ 52250367 (+) True AMCG00004516
AMCG00004520 mRNA upstream 283703 52248670 ~ 52249026 (+) True AMCG00004520
AMCG00004515 mRNA upstream 288771 52243644 ~ 52243958 (+) True AMCG00004515
AMCG00004512 mRNA upstream 295758 52233618 ~ 52236971 (+) True AMCG00004512
AMCG00004513 mRNA upstream 320317 52197328 ~ 52212412 (+) True AMCG00004513
AMCG00004527 mRNA downstream 298158 52831176 ~ 52844818 (+) True AMCG00004527
AMCG00004530 mRNA downstream 350190 52883208 ~ 52895403 (+) True AMCG00004530
AMCG00004531 mRNA downstream 378992 52912010 ~ 52912584 (+) True AMCG00004531
AMCG00004535 mRNA downstream 382630 52915648 ~ 52916301 (+) True AMCG00004535
AMCG00004538 mRNA downstream 432196 52965214 ~ 52985350 (+) True AMCG00004538
TU10796 other upstream 519099 51989353 ~ 52013630 (+) True AMCG00004509
TU10780 other upstream 585911 51939561 ~ 51946818 (+) True AMCG00004501
TU10626 other upstream 1417467 51114941 ~ 51115262 (+) True G8606
TU10527 other upstream 1779380 50743791 ~ 50753349 (+) False AMCG00004477
TU10340 other upstream 2375010 50151264 ~ 50157719 (+) True G8377
TU11143 other downstream 650376 53183394 ~ 53183983 (+) True G9012
TU11164 other downstream 731289 53264307 ~ 53270070 (+) False AMCG00004546
TU11263 other downstream 1070743 53603761 ~ 53607898 (+) True G9118
TU11273 other downstream 1103021 53636039 ~ 53643598 (+) False AMCG00004563
TU11276 other downstream 1114993 53648011 ~ 53843859 (+) True G9128

Expression Profile