RNA id: TU1177


Basic Information

Item Value
RNA id TU1177
length 320
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G990
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5986038 ~ 5986394 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaagtgtcaactcaactcgccgtgtttggaggaggaggaatgctgcctatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgttttgggggtgtttttctgctaaggggacaggacaacagcaccgcatcaaagggacgatggacggggccatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1170 lncRNA upstream 30218 5955604 ~ 5955820 (+) True G983
TU1140 lncRNA upstream 156293 5829459 ~ 5829745 (+) True G960
TU1088 lncRNA upstream 427523 5557607 ~ 5558515 (+) True G908
TU1087 lncRNA upstream 429732 5550745 ~ 5556306 (+) True G907
TU992 lncRNA upstream 651286 5332509 ~ 5334752 (+) False AMCG00003480
TU1358 lncRNA downstream 1087010 7073404 ~ 7073609 (+) True G1146
TU1403 lncRNA downstream 1378550 7364944 ~ 7365477 (+) True G1187
TU1436 lncRNA downstream 1503051 7489445 ~ 7489881 (+) True G1218
TU1445 lncRNA downstream 1511673 7498067 ~ 7498344 (+) False AMCG00003524
TU1466 lncRNA downstream 1537467 7523861 ~ 7750465 (+) True G1241
AMCG00003496 mRNA upstream 70446 5914471 ~ 5915592 (+) True AMCG00003496
AMCG00003497 mRNA upstream 160306 5824581 ~ 5825732 (+) True AMCG00003497
AMCG00003498 mRNA upstream 216101 5767358 ~ 5769937 (+) True AMCG00003498
AMCG00003495 mRNA upstream 232777 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003487 mRNA upstream 479131 5463759 ~ 5506907 (+) True AMCG00003487
AMCG00003500 mRNA downstream 280507 6266901 ~ 6267507 (+) True AMCG00003500
AMCG00003499 mRNA downstream 388865 6375259 ~ 6376299 (+) True AMCG00003499
AMCG00003501 mRNA downstream 634417 6620811 ~ 6646702 (+) True AMCG00003501
AMCG00003505 mRNA downstream 737136 6723530 ~ 6736370 (+) True AMCG00003505
AMCG00003506 mRNA downstream 832222 6818616 ~ 6825710 (+) True AMCG00003506
TU1202 other downstream 501298 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 2662731 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 3269434 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 3791114 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 5503791 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile