RNA id: AMCG00004975


Basic Information

Item Value
RNA id AMCG00004975
length 549
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00004975
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11717322 ~ 11757176 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGCTTCCTAAACGAGGGGAGCTGGACCCACGCAGCATGCTGGACAGCACAGCCTGCCATCTGCGGGAACATACTGTAGCACTTGGAGGGATGAGGAATGGTTATAATCAGGAACTACAGATCAAAATGGCATGGGTGAACCTCGCAAATTTGATCCAACATTCAGAGGACCTATCCACAACAGGTTATTGCCCTGCCGAGTGCAATCCCCCGAAGGGAACCACACTGTTCGGATCTGAAGTCAACGTTGGTGGCTTGGAAAATTGTTTGCTCACTGTCCGGGTGTCCGAGGCACCGTGGAGACAGCGGCGGCAGCAGCATCTCGGCAGATTGAGTCTGTTCAGCCACTGTGCCCAAGTGGTGAATGAAGGGTACCAACTGACTGTCTTGCACCGGAACTGTACTGATGTGGTCTGCTGCGTAATCTTTGTGATTGTTATCTTGGGCTACATTGCTTTGGGAACTGTTGacaaaacaaatgaaatcgGCAGTGATATCACAACCCATCTCACTCAGCCAGCACCTTGGGATTTGGATTACGTCTGA

Function

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 40417 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 40417 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 43807 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 44837 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 45880 11669475 ~ 11671442 (+) True G144680
TU182090 lncRNA downstream 342188 12099364 ~ 12176426 (+) False G144788
TU182091 lncRNA downstream 342188 12099364 ~ 12192733 (+) True G144788
TU182111 lncRNA downstream 436950 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 439096 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 482315 12239491 ~ 12242198 (+) True G144809
AMCG00004976 mRNA upstream 1273 11682833 ~ 11716049 (+) True AMCG00004976
AMCG00004966 mRNA upstream 51221 11664846 ~ 11666101 (+) True AMCG00004966
AMCG00004965 mRNA upstream 235089 11472530 ~ 11482233 (+) True AMCG00004965
AMCG00004964 mRNA upstream 306980 11401533 ~ 11410342 (+) True AMCG00004964
AMCG00004969 mRNA upstream 327709 11364432 ~ 11389613 (+) True AMCG00004969
AMCG00004974 mRNA downstream 2745 11759921 ~ 11782145 (+) True AMCG00004974
AMCG00004993 mRNA downstream 81770 11838946 ~ 11840697 (+) True AMCG00004993
AMCG00004991 mRNA downstream 83990 11841166 ~ 11850241 (+) True AMCG00004991
AMCG00004992 mRNA downstream 103239 11860415 ~ 11866438 (+) True AMCG00004992
AMCG00004978 mRNA downstream 125907 11883083 ~ 11889871 (+) True AMCG00004978
TU181952 other upstream 53954 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 3986322 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6293201 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7345233 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7607667 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 1023404 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3627067 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6008081 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7822397 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8425178 20182354 ~ 20184643 (+) True G146519

Expression Profile