RNA id: AMCG00004974


Basic Information

Item Value
RNA id AMCG00004974
length 3630
RNA type mRNA
GC content 0.43
exon number 19
gene id AMCG00004974
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11759921 ~ 11782145 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTGGCAGGAAGAgaaggggagggtggggggtctgTGATGGTGACATGGATGACACGGGCCGCCACAGGACTGCATGCCTCTTCAGCGGCTACCTCTGGGAGGGAGCTGACAGGCGTGTGGGGCCCGGCACCGTGGCCCGGCCCAGAGAGCATGACCAGAGCACATCCTGGATACATGGAGACCCTAGGAAAGTGGTGTACCCAACTGACAGCTATGGGCAGTTCTGTGGCCAGCAAGGCACCCCGAATGCAAACAAAGCCATATTATTCTActtcaacattttgaaatgcgCCAGTCCTGCAGTCTTAATAAACCTACAGTGCCCGACCACACAGCTATGTGTTTCCAAGTGCCCAGACAGGTTTGCCACCTACTTAGACATGCAGTATGCTTACAGATACAACAAGAGCTACTGGGAATACTACCGGCAATTCTGCAAGCCAGGATTTAACAATCCCAAAAAGTCTGTTGGACAAGTTTTACAAGACGAAGATTGTCCGTCTATGATAGTGCCAAGCAGGCCATTTCTTCAGCGCTGCTTCCCAGATTTCACCACCAGAAATGGGGTGCTGactgttcaaaacaaaactaccTTTAAAGACGGACGAGGTAAAACGAGAAACGTGACTGATCTCAGAGAGGCGGCCAATGGCATAAACAGCCTTCTCGACGCCAGGGAAGTGGGGATGAAGATTTTCGAAGACTACGCCAGCTCTTGGTATTGGATTTTAATTGTCGTGTCGTTTCGTGCAGGAATCTGGCACTGTTACTGGGAGTTCAGCACCCTGCGAGGGAAGCCCGGCGCTGACGTCACCATCTCAGACATCGGTTTCCAGACGGACTTCAGAGTCTACCTGCAGCTCAGTCAGACCTGGCTCATCTTCATGATATTCCTGTGCATCATTGAAGTCATTATAATACTCATGCTGATATTCTTGAGGAACAGAGTCCGCATAGCGATCGCGTTGCTCAAGGAAGGAAGCAAGGCGATCGGATACATCATGTCCGCACTGTTCTACCCCATCATCACTTTCCTTCTCATAGCCGTGTGCATCTCCTACTGGGCTGTTACGGCTGTCTTCTTGGCATCTTCTGGAGAGCCTGTCTACAAAGTGATGCCTACACAACCAAACTGCATGTATGCAAACCTCACATGTAATCCTGAaACTTTCAATAAAACCAACGTGACCAAGGTGTGTCCTGGCTCTCAGTGCACGTTTGCGTTCTACGGCGGGGAGTCTCTCTACCACCGGTACATCTTCATCCTGCAGCTGTGCAATCTGCTGGTGTTCCTGTGGCTCGTCAACTTCGCCATCGCCCTGGGCCAGTGCACCCTCGCCGGGGCCTTCGCCTCGTACTACTGGGCCATGAAGAAGCCGGCCGACATTCCCGTGTGCCCCCTCTTCTCCTCGTTCGGGAGAGCCATAAGGTATCACACGGGCTCTCTGGCGTTCGGCTCGCTCATCCTTGCCATCGTACAGCTGATCAGAATCATTCTGGAGTATCTGGACCACAAACTGAAAGGCGTGCAGAACTCGTTCGCCAGATTCCTGCTATGCTGTCTAAAATGCTGTTTCTGGTGCTTGGAGCATTTCATTAAATTCATGAacagaaatgcatacataatgATTGCAATATATGGCAAGAATTTCTGCACGTCAGCAAAAGATGCTTTCTTTTTGCTGATGAGGAACGTTGTCAGAGTTGCAGTGTTAGACAAGGTCACAGACTTCCTGCTGTTCCTAGGGAAAGTTCTCATTGCAGGAAGTGTTGGTGTCCTtgccttcttcttcttcacacGTAGAATACCTGTTATTCAAGAAGAAGTACCATCATTAAACTATTACTGGGTGCCACTCTTGaCAGTGATCTTTGGTTCCTACCTGATCGCTCATGGCTTTTTCAGCGTCTATGCAATGTGTGTCGACACCCTGTTCCTGTGTTTCTTGGAAGATCTGGAGAGGAACGACGGCTCTCCCGCCAGGCCATTTTACATGAGCGGCTCTTTGATGAGGATCCTGAACAAGAGAAATAAAGGCGCAGCGACGGTCTCAGGGCAGTGAGTGTGAGGGGAAGGATGGGCAGGTGTTGCCATGCTCCTGTGCGAGTTTTCTGCCAAGACACCCAGAATGAATGTATGTCTCTTATTACAAGGACAAAATGTGTAGAATTTGGGGTTATTGGAACATGTTTTATATagacttattttcagtaatccCAAATACTACTATATAGTTAAATTTATATAAAGTTTATTCAAGAAAATTAaagggaattattttattacattatcatatgtataaaagtaattaatgtgGTCAAGATGTCATTTATATTgccatattttacaatattgtcAGTGCAAAGTGTACTGCTGCGAAATACATGccttttattctgaaatgtgtCTCTGCCCTAAAGGTTTAtaggtttttacaaaagcatTGGGTTTTactgatgcatttgttttgggTGATATAGGAGTATATTCCTGCTCACATGTGAAGATGCACCCTTATTGGTAGAAAGTTCATTTTTAGAAAATGATGCTATTAAAATAGCTAAGGAAGCAGTCGggatgctttatatatatatatatatatatatatagtcaattGTGAAAAGTCCAATCCATCTCAGATGTGCTTCCCTACCAAGTTCCTAGTGTCACTCAGTGTCCACCAGGAGGCACTGCAAACCCAATCAGTATCAATAATAACAAgactgttaaaatgttttgtagtttCAGCTTTCAAATTAAGGAGATAAACATTTTCCTTAAATGTACTTTTGATACATTTCTGTACTATAGCTAAGAACATGTTTCACACCAATTCAGAATAAGACTCCAGGTGCTCAGTCAGGTAAATATACCCTGATTGTCTTACAAAGcagaatcaaatattttaatacattcacCTTAGACTAGATGTATACACTTTCTTTCCTCTTTAATGAAAATGAGTTTTACTGTATTTGCAAAACATGTTACAGAGCATCAAGCCAAATGAACACTACATGGAACTGTACATTGTTAGCAAGCCCTTCTGCTGTGCAGAAATGGAGAATGTAAAATGCTTTTGGGTAAACTGATGTGTAActatttgtttctttgaaacTATCAGTATTGTTTTCTTGATCATAAAGTTCAATTTGAAATTGTGTGGCATAATTTTGTTTGAGTTCAGTTTATTTGTACTATAAAAGGTTGAtcaaaaataatgcataatttcaGTGCCTGTCTGAATGTGATGAGAACTTAATCAGTCCCACAAGATTTGATATTTGTACTTAATAGGCCATACTTTCATTCTTACTTAAACACTGGTATAAAAAAGTACATGTTAATGAACTACACAGTTATTAAACTGAACACTGaatttttttaactaattaatCTGTACATAACCATTATATATCCAAGTAGAATAGGATCCATTTACTGTTTTCCATTAAACATGCTGTGCATTTCCAAAGTAAAGAATGGCCTGATGCCAATCAGGGGGAGAGATAGAGAACATGGCAACATTGTGGGGTTAAAGCAATTGCATCACATTGCACCATGTGACAGTAAAGACAAGTGTTGACTTGAATATATGGTTTGTTGCTTAGGAAAAGAATAAAGC

Function

GO: NA

KEGG:

id description
K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 83016 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 83016 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 86406 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 87436 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 88479 11669475 ~ 11671442 (+) True G144680
TU182090 lncRNA downstream 317219 12099364 ~ 12176426 (+) False G144788
TU182091 lncRNA downstream 317219 12099364 ~ 12192733 (+) True G144788
TU182111 lncRNA downstream 411981 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 414127 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 457346 12239491 ~ 12242198 (+) True G144809
AMCG00004975 mRNA upstream 2745 11717322 ~ 11757176 (+) True AMCG00004975
AMCG00004976 mRNA upstream 43872 11682833 ~ 11716049 (+) True AMCG00004976
AMCG00004966 mRNA upstream 93820 11664846 ~ 11666101 (+) True AMCG00004966
AMCG00004965 mRNA upstream 277688 11472530 ~ 11482233 (+) True AMCG00004965
AMCG00004964 mRNA upstream 349579 11401533 ~ 11410342 (+) True AMCG00004964
AMCG00004993 mRNA downstream 56801 11838946 ~ 11840697 (+) True AMCG00004993
AMCG00004991 mRNA downstream 59021 11841166 ~ 11850241 (+) True AMCG00004991
AMCG00004992 mRNA downstream 78270 11860415 ~ 11866438 (+) True AMCG00004992
AMCG00004978 mRNA downstream 100938 11883083 ~ 11889871 (+) True AMCG00004978
AMCG00004979 mRNA downstream 108519 11890664 ~ 11896684 (+) True AMCG00004979
TU181952 other upstream 96553 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 4028921 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6335800 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7387832 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7650266 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 998435 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3602098 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 5983112 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7797428 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8400209 20182354 ~ 20184643 (+) True G146519

Expression Profile