RNA id: AMCG00004976



Basic Information


Item Value
RNA id AMCG00004976
length 810
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00004976
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11682833 ~ 11716049 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGCGTCACGTGCGCAGCTGCCTCTACACTGGCATCTTGGTGGTGATGGGGCCGGAGAAGTCAGGGAGGCTGAAGAGGAGAGAACTCATAGCCTCCACAGGAGCGCTGGGCAGACAAGTGAGGGCGAAGGGCGAAGTGCTCAGTGACAGGAGAAACCCTGATGCCGCCGTGGAAGGCAGGGTCCTCTGGGGGCAGATTGGTTTTATATCAGAGCAAAACATGTATACAGATTTGAAAGAAGCCTCACATGCCATCACAACAACAAAGAGCCACGCCAGATCTCTCCAGCCCTCGGTGCCATGGCAAGGAAAACTGAAATCCCCTCCTCATTTTATGACCTTCTATTTGAATATACAGCTCTTTCTGGTGTCTGTGGGGCTGGAGAAAGATGAGAATCTAAAATGGGATGCAACTGGAGATGGaagcAAAATCTCTGTGCACTACCACAGAACTGATGCCCACATGGGAACTTACTTCCTCAGTAGACCCACCAATagAAACAAGGTGTTCCTTTTGCCTGACAGCCAGCTGAGGACTTCGGGGGTGCAGATTCAGTTCTGCAATGGTAATGAGAATGAGCCCGTTACCTCTAGTAGTCATGCTAGTGGCCTTTTGAAGGGCAGTGGAGTTTATGGAGTGAATCGATACAGACGCAATAATGATGTCGGGATAGCAGAAGTGAAAGGCTGCAAACCCAGAGCAAACCCGAGGGAAAAGCCCGGTCTCTTCGGGGGCAGAAAAGACACTGAACCACACTCCCCAGGGCTGAGGCAAATGGATACAGAAAACGAGGAGAAATGGAGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 5928 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 5928 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 9318 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 10348 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 11391 11669475 ~ 11671442 (+) True G144680
TU182090 lncRNA downstream 383315 12099364 ~ 12176426 (+) False G144788
TU182091 lncRNA downstream 383315 12099364 ~ 12192733 (+) True G144788
TU182111 lncRNA downstream 478077 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 480223 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 523442 12239491 ~ 12242198 (+) True G144809
AMCG00004966 mRNA upstream 16732 11664846 ~ 11666101 (+) True AMCG00004966
AMCG00004965 mRNA upstream 200600 11472530 ~ 11482233 (+) True AMCG00004965
AMCG00004964 mRNA upstream 272491 11401533 ~ 11410342 (+) True AMCG00004964
AMCG00004969 mRNA upstream 293220 11364432 ~ 11389613 (+) True AMCG00004969
AMCG00004968 mRNA upstream 357170 11316701 ~ 11325663 (+) True AMCG00004968
AMCG00004975 mRNA downstream 1273 11717322 ~ 11757176 (+) True AMCG00004975
AMCG00004974 mRNA downstream 43872 11759921 ~ 11782145 (+) True AMCG00004974
AMCG00004993 mRNA downstream 122897 11838946 ~ 11840697 (+) True AMCG00004993
AMCG00004991 mRNA downstream 125117 11841166 ~ 11850241 (+) True AMCG00004991
AMCG00004992 mRNA downstream 144366 11860415 ~ 11866438 (+) True AMCG00004992
TU181952 other upstream 19465 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 3951833 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6258712 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7310744 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7573178 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 1064531 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3668194 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6049208 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7863524 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8466305 20182354 ~ 20184643 (+) True G146519

Expression Profile