RNA id: AMCG00005770


Basic Information

Item Value
RNA id AMCG00005770
length 1572
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00005770
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9587799 ~ 9589780 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAATCCCTTCCCACCTGTcgcagctctgcgcggctccaccaatgggctCGGTGCgcttgtgcagatctgtgcgcagaactgcgggatCTGCGCTGCGCGGCCGGCCGCCTCCCACTGCTGCCCCCGGAACCGCTTGCAGCCGGATGCGTTTTTCGGCGCAGGCGGCTGAGAGAGCGCAGACACGGTGTTTGTGGCCGGATTGTGCGTGTCGACCATGTCGTCCTCGTCGCCCCGCGGCCTCCTCCGCATCCTGTGCGTGCACGGCTACCGGCAGAGCGGCGCTGTGTTCCGGGACAGGACCGGCGCCCTGCGGAAGGCCCTGAAGAAGCACGCCGAGCTGGTGTACATCAGCGCCCCGCTCCGGATCGGCGAGCTGCGGCAGCCCGGGCCGGCGCTGGCGGACTCGCAGGCCACGGACGCGGTGCCCCCTCAGGAGGAGGACGCCAGGGGCTGGTGGTTTTCCAACGCCCAGGAGCAGACCTTCAATGCCGGGGAGGTCTGCGACTCGAGCCTGGGGCTGGAGGAGAGCCTGGAGGAGGTGCGGCGGGCGGTGAGGGAGCAGGGCCCCTTCGACGGCGTGTTGGGCTTCAGTCAGGGGGCCGCGCTGGTGGCCATGCTGTGCGCGCTGCAGGAGAGCGGTCAGGAGGCCGGTCTGGGCTTCCGCTTCGCCCTGCTGGTGGCGGGCTTCCGCAGCCTTTGTGTCGCACACGCCCGTTTCTACACCCCACAGCCCCTGGCCATGCCAACGCTTCATGTGTTTGGAGATGCTGACCGGGTCATCCCAGCCCCCCTGAGCCAGGACCTGCTGTCAGTCTTCCACAGCCCGCAGGTCGTCACACACCCCGGGGGGCACTACATCCCCGCCGGCGCTGCGCAGAAACGGGCCTACATCCAGTTCCTGGAGCAGTTCCTCAGCAAGGGAGCAGTGGGCAGCTCTTAAACGCTGGCAGCATGTAGATCACCGCGGTCTGTACGCCTCACTGTGTCTGAGGGGCTGGAGAGACCCAGTCTAGCAGGTCTATAGGCGTCTTCAGTCACTGGCTGGAAATCGTAGATCAAACAAGATCTCAAGTTGGCCACCTCTCATCTAAGAAATTAAGATTTACAGTCAAATGAGACGCAAGAGACCCTGGGCTGTCCTCGGTTTAGGTTTCAGTGTTTCCATTAGGGTTAGGGGCCTGGATAGGGTCTGGTTCCACTGCAGTAAGCCCCTTTCACACTAGCATGCCCTACCTGGGTCGACCCAACCCAGAGCACAGCATCCAAAATCCAATGCATCAGTCAGAGTTTAAAGTGGCCATGAGATCTTTGAATTAACTAAATTTTATTCGATGGCACTGAAGTCCAGCAGCCCCCCAGGGCAAGAACATTCTCCTCCAGTACAGATTGCAGGTGACCAACCAACTGACCAGTCCAGTGGTTCTAGTGCCAGCCCGACCGTTCTGGAACCGGAGCCACCGGAGCTGCACTAGTGCATGGATTGGAGAATTACAGGATATTTGCACAACTTCTCAGGGAGGACAGATATGTTTTCACGGGCATAAATTTGTCAATaaacatgtcaaaataaa

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194320 lncRNA downstream 14891 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 149900 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 194466 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 255766 9331343 ~ 9332033 (-) True G154235
TU194270 lncRNA downstream 257266 9325522 ~ 9330533 (-) True G154234
TU194453 lncRNA upstream 499774 10089554 ~ 10091616 (-) True G154391
TU194464 lncRNA upstream 547648 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 554703 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 953754 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 986190 10575970 ~ 10576502 (-) True G154575
AMCG00005772 mRNA downstream 7104 9572937 ~ 9580695 (-) True AMCG00005772
AMCG00005771 mRNA downstream 52529 9521298 ~ 9535270 (-) True AMCG00005771
AMCG00005773 mRNA downstream 79263 9500028 ~ 9508536 (-) True AMCG00005773
AMCG00005766 mRNA downstream 107953 9475577 ~ 9479846 (-) True AMCG00005766
AMCG00005765 mRNA downstream 124738 9439061 ~ 9463061 (-) True AMCG00005765
AMCG00005780 mRNA upstream 19311 9609091 ~ 9625629 (-) True AMCG00005780
AMCG00005782 mRNA upstream 44004 9633784 ~ 9639483 (-) True AMCG00005782
AMCG00005781 mRNA upstream 83910 9673690 ~ 9679085 (-) True AMCG00005781
AMCG00005769 mRNA upstream 248377 9838157 ~ 9860924 (-) True AMCG00005769
AMCG00005811 mRNA upstream 280298 9870078 ~ 9890583 (-) True AMCG00005811
TU194289 other downstream 152859 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 495226 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1463114 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1586459 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1799478 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 725600 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 725600 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1254061 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1316515 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 1320736 10910516 ~ 10912745 (-) True G154677

Expression Profile