RNA id: AMCG00005781


Basic Information

Item Value
RNA id AMCG00005781
length 297
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00005781
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9673690 ~ 9679085 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCGCCCACAGCAGAGACGAGAGTGGCAGCGGCCGGGAAAACGACAGCTCGAGGACCCCGGCGGGTGGCCAACCAGATCCCCGAGGACATCCTGCAGGACCCCGAACTGCAGGCGGCCATCCAAGCACTGCCCGAGAACTACAACTTCGAGATCCCCAAGACGGTATGGAGAGTCAGGCAGGCCCAAGCCAAGAGAGAAAAATCTATGGATGGCACCACTGGGCGCCAGGAGCCTTATTTCAGTCGTTGCATTGGCAGTGCTCAGGCCGACAAACAGTACGAGgtgatttag

Function

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194320 lncRNA downstream 100782 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 235791 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 280357 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 341657 9331343 ~ 9332033 (-) True G154235
TU194270 lncRNA downstream 343157 9325522 ~ 9330533 (-) True G154234
TU194453 lncRNA upstream 410469 10089554 ~ 10091616 (-) True G154391
TU194464 lncRNA upstream 458343 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 465398 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 864449 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 896885 10575970 ~ 10576502 (-) True G154575
AMCG00005782 mRNA downstream 34207 9633784 ~ 9639483 (-) True AMCG00005782
AMCG00005780 mRNA downstream 48061 9609091 ~ 9625629 (-) True AMCG00005780
AMCG00005770 mRNA downstream 83910 9587799 ~ 9589780 (-) True AMCG00005770
AMCG00005772 mRNA downstream 92995 9572937 ~ 9580695 (-) True AMCG00005772
AMCG00005771 mRNA downstream 138420 9521298 ~ 9535270 (-) True AMCG00005771
AMCG00005769 mRNA upstream 159072 9838157 ~ 9860924 (-) True AMCG00005769
AMCG00005811 mRNA upstream 190993 9870078 ~ 9890583 (-) True AMCG00005811
AMCG00005810 mRNA upstream 212573 9891658 ~ 9906312 (-) True AMCG00005810
AMCG00005809 mRNA upstream 264606 9943691 ~ 9946696 (-) True AMCG00005809
AMCG00005800 mRNA upstream 379836 10058921 ~ 10065450 (-) True AMCG00005800
TU194289 other downstream 238750 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 581117 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1549005 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1672350 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1885369 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 636295 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 636295 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1164756 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1227210 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 1231431 10910516 ~ 10912745 (-) True G154677

Expression Profile