RNA id: TU28712


Basic Information

Item Value
RNA id TU28712
length 1047
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G22901
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 13630245 ~ 13631291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttaaccagTGACCGAGAACAAGTTTCTGGTGCTTTAGTCATAAGATTCAATTACCTTTATTACCAACTTTATTGTGCCTTTtggggcggggtggggggtatcttgttttgttttaaagtcaaACCTTACGTGTTCAATTGATCCATTTAAATTGAAGTCAACTTTCGTATCAAACAGCTCTGTGAAATCGTGACGTGCTTGCTAGCTGCGTCTCAAGAATGGTTTGCTTTCCATGTCAAAGTTGCTACAAAATGTCACCAGGCCACCGTCAACCGAGATGACTAAACATGATCATCATGCATAAGCCACACATTTGAAATCAATCGTATTTTGGAGTTTACCTGTTTTCCCAACAGCGCCTTGTCCTAACACGACTATCCTGACAGTTCTGGAGGAAGGGAGACTTCCCGATCTCCTCAGAGGTCTTGGCAAAGTGAAATTTGTGGTCATCTTAAGATCCTTGAAATGAACTTTAAATTACTCATTGCAGGAGGATCATGCATAAACTCCAAAGAGTTCTCCTCTTGTCTGAAACTGAAGTGTGTGTATGGGAAAAGTATCCCTTCTGTTTCCGAATAGCAGCCCAGAGGAACAGGACAGTAAACGCCTTTGTATCTGCCCCTCCTCTCAGTCACTCATAATTTATGCTGACGTTCGCAATTAAGTTGATAAATCCAAGGCTGTGCAAATGATGTGAGTCCCGACTGAGCTTTCTTCCTATCAACAGCTTTAGGAAAACACATACGCAATGGCACCCAAAATATGAACCACAGATTGCATAagttaggtaaaaaaaaaaatgcggACATATGGGTATTGATCAATAGGGATAATTACAACTGACTGCCCACCTAAACTGGGACAATGCGGGTGCCTTATCAATTATCAATAATAGAGGGGAAAGTCGCGAAGCAGTCATGAGGAACAAAACTCAAGCTCTGATGCAACATGCACATATTTGCTGAAGTTTGAGGGTTAGATTTTGTAATCATTcttttctgtttaaaacaatacaattttatttatcaagTTCTACCAATCTGTTA

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28614 lncRNA downstream 636309 12993677 ~ 12993936 (-) True G22819
TU28586 lncRNA downstream 1536769 12081746 ~ 12093476 (-) True G22794
TU28576 lncRNA downstream 1722751 11907274 ~ 11907494 (-) True G22785
TU28570 lncRNA downstream 1738604 11891388 ~ 11891641 (-) True G22779
TU28569 lncRNA downstream 1739258 11890669 ~ 11890987 (-) True G22778
TU28713 lncRNA upstream 15240 13646531 ~ 13649777 (-) True G22902
TU28752 lncRNA upstream 401058 14032349 ~ 14033212 (-) False AMCG00007326
TU28762 lncRNA upstream 429479 14060770 ~ 14061129 (-) True G22941
TU28763 lncRNA upstream 430443 14061734 ~ 14062135 (-) True G22942
TU28764 lncRNA upstream 432204 14063495 ~ 14065298 (-) True G22943
AMCG00007319 mRNA downstream 15800 13576675 ~ 13614445 (-) True AMCG00007319
AMCG00007320 mRNA downstream 235819 13392900 ~ 13394426 (-) True AMCG00007320
AMCG00007316 mRNA downstream 365283 13062794 ~ 13264962 (-) True AMCG00007316
AMCG00007315 mRNA downstream 1310531 12317831 ~ 12319714 (-) True AMCG00007315
AMCG00007313 mRNA downstream 1323189 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007318 mRNA upstream 46690 13677981 ~ 13687064 (-) True AMCG00007318
AMCG00007323 mRNA upstream 112679 13743970 ~ 13856397 (-) True AMCG00007323
AMCG00007325 mRNA upstream 263594 13894885 ~ 13911848 (-) True AMCG00007325
AMCG00007324 mRNA upstream 308049 13939340 ~ 13940671 (-) True AMCG00007324
AMCG00007326 mRNA upstream 350083 13981374 ~ 14033164 (-) True AMCG00007326
TU28633 other downstream 278172 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 3440041 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 5234021 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 6123370 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 7616076 6007640 ~ 6014169 (-) False AMCG00007173
TU28749 other upstream 314352 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 2689706 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 2689746 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 2898883 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 4424179 18055470 ~ 18058949 (-) True G23661

Expression Profile