RNA id: AMCG00007325


Basic Information

Item Value
RNA id AMCG00007325
length 753
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00007325
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 13894885 ~ 13911848 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTCCTGGGAGGAGCCAGAGCAGGAAGAGCTGCAGAATGATGGGACATGTGACGCCTGTGAGCCAGACGAGGCGCTGCCAGCTGCCAAAATATGCCACTCTTGCAACTTTGCCTTCTGTGACATCCACGCCGAAAAACACCACAAGAGCACCCGTCACAACCTAGAGCCATATGGAGATGAAGAAGCCCAGAGGACAAATAACGCCAGCCCTGGGGACGAAGGATCGATAGAGAGGAGTGGCAGTCCAGAAGAGGGAGCTGCGGGAGGTGGGGCAGGGCTGGCCCCTGGGATCCCAGAGAATGGCAAAGTGAGAGAAAGCGTGACAGTGGAGAGGCTACGCTGTAAGGAGCATGGCCAGGAGGGGACACTGTACTGCAAGCTGGATGAAAAGATTATCTGCGTGGTGTGCGCTGTGCAGGGGGCCCATCGGGAGCATGAGATCATAACCCTGAGGGAGGCGTACATGTGGCAAAGAATGGGAACAGAAGACCTAGAGGCCTATGTTAACAAGCAGTTTGATGAGCTACATCAGCTTGTGCGGCAAGAGGAGCGGCGCACTCTGCACTTGGTGGACCTGAAGGAGGCCTTTCTGACAGCCCGGGCAGCCGAGAAGATTGCAGAGATCACTGTTCACACTGAGAAATTGCAGGAAGAGATGGCCTCCATCACGAAGCAGCTTGGTGCCTTAGACCACGGAGAAGATGCAAACCCACTGGTGAGCCCCCGTTATTCAACAACAACTAATTGA

Function

GO: NA

KEGG:

id description
K12020 TRIM44; tripartite motif-containing protein 44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28713 lncRNA downstream 245108 13646531 ~ 13649777 (-) True G22902
TU28712 lncRNA downstream 263594 13630245 ~ 13631291 (-) True G22901
TU28614 lncRNA downstream 900949 12993677 ~ 12993936 (-) True G22819
TU28586 lncRNA downstream 1801409 12081746 ~ 12093476 (-) True G22794
TU28576 lncRNA downstream 1987391 11907274 ~ 11907494 (-) True G22785
TU28752 lncRNA upstream 120501 14032349 ~ 14033212 (-) False AMCG00007326
TU28762 lncRNA upstream 148922 14060770 ~ 14061129 (-) True G22941
TU28763 lncRNA upstream 149886 14061734 ~ 14062135 (-) True G22942
TU28764 lncRNA upstream 151647 14063495 ~ 14065298 (-) True G22943
TU28799 lncRNA upstream 272854 14184702 ~ 14189688 (-) True G22971
AMCG00007323 mRNA downstream 38488 13743970 ~ 13856397 (-) True AMCG00007323
AMCG00007318 mRNA downstream 207821 13677981 ~ 13687064 (-) True AMCG00007318
AMCG00007319 mRNA downstream 280440 13576675 ~ 13614445 (-) True AMCG00007319
AMCG00007320 mRNA downstream 500459 13392900 ~ 13394426 (-) True AMCG00007320
AMCG00007316 mRNA downstream 629923 13062794 ~ 13264962 (-) True AMCG00007316
AMCG00007324 mRNA upstream 27492 13939340 ~ 13940671 (-) True AMCG00007324
AMCG00007326 mRNA upstream 69526 13981374 ~ 14033164 (-) True AMCG00007326
AMCG00007330 mRNA upstream 362212 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007331 mRNA upstream 374767 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007333 mRNA upstream 495296 14407144 ~ 14425504 (-) True AMCG00007333
TU28633 other downstream 542812 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 3704681 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 5498661 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 6388010 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 7880716 6007640 ~ 6014169 (-) False AMCG00007173
TU28749 other upstream 33795 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 2409149 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 2409189 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 2618326 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 4143622 18055470 ~ 18058949 (-) True G23661

Expression Profile