RNA id: AMCG00009627


Basic Information

Item Value
RNA id AMCG00009627
length 5091
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00009627
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42891698 ~ 42913492 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGACGCAGGGACGCCGCAGCCCGCCCCCTGGGCGCTGtgagtgttgttgttgtgcggCTCCGGCTCAGTCAGCCCGGGCAGAGACAGCGGCAGGTACGGAGCTCCGCACGGTCCATTTATGAGCGCTTTGGGACAAGACGCAGTTTAGCGCTTCGGTACCGAGGTTATCCTGTTGCACAGAGACACGCCAGCATGGCCTGCAGAGCGCTGGGCAGCCTGAGCCGGGCCCTGTGGCAGAGAGAGGTGCGGGGGCTCCAGCTCTGGAAAGCGGCGAGGGTCCCCGCCCTGGCGTGTGGCGGCGTCGCGCCCGGCGGCCTGGACGGGAAGAAGTGCTGCAAGAGCGGGCCTGGGGCCACCGGGGCTCcgggctcctcctcctccgccggGGCGTCGGCACCCTGCTCGACCCCCGCGCCCTCCCCGGCCCACAGGCACCAGCTGGGGGGCAAGAAGCGCGCCGAGGAGTCGGTGACCGTGTCTGGGAGATCCTACTCCTCCACCGCCCCCAAGATCGACCCCAAAACCTATCTGTGGGCCCGGTACAACGAGATGAAGCGCCTGGTGCACGACCTGATCCCCCCGGGCGTGTGTAACCTCCTGAACCCCTCCACCATCTACGCAAACAATGAGGTCAACCTGGATGAGGTGGACATCTACGGCTTCGACTACGACTATACCCTGGCCCTCTACTCCAACGCTCTGAACTCCATGATCTACGACAAGGCCCGGGACTTTCTCATCGAGCACTACAAGTACCCAGAGGGAATTCGCAAGTACGACTACATCCCCAATTTCGCCGCCCGTGGCCTCCACTACGACATCCAGAAGGGGCTGCTGATGAAAATCGATGCTTTTCATTACATCCAGCTGGGCACGGTTTACAGGGGCCTGAAGCCCGTCTCGGATGAGGAGGTGCTGCAGCTGTACGGTGGGACGCACCACGTCCCCCTGCACCAAGTCAGCGGCTTCTATGGCAAGGGTCCCAAGATGAAGCAGTTCATGGACGTCTTCTCCATCCCCGAAATGACGCTGCTGGCGGCCGCCAACGACTTCTTCATCTCGAATGACATCGAGTACGACCCCGTGCATCTCTACAAGGATGTCTCGGATGCCATCGGGATGGTGCACATCAAGGGCTACATGTACAAGTGGATCATGCAGGATCTGGAGAAGTACATCCTGCGGGGAGACGAGACCTACGCCGTCCTGCACCGCCTGGTCAGCAGCGGCAAGAAGCTCTTCCTCATCACCAACAGCCCCTTCAGCTTCGTTGACAAAGGCATGAAATACATGGTGGGCAAAGACTGGAGGGACTTCTTTGACGTGGTCATCGTGCAGGCCGACAAACCGCACTTCTTCAACGACTGCGTCAAGCCCTTCCGACGCCTGGATGGCAACGGCGATCTTCAGTGGGACAAGATCAACAGCCTGGAAAAGGGCCAGATCTACAAACAGGGCAATCTCTTCGACTTCCTGCGGCTGACCGGCTGGAGGGGGTCCAGGGTGCTCTACTTCGGAGACCACCTGTACAGCGACTTGGCCGACCTGATGCTGCGTCACGGCTGGCGGACCGGGGCCATCGTGCCGGAACTGGAGATGGAGACCAAGGTGGTGAACACAGAGCAGTACGCCCAGAGTCTGACCTGGCTGCAGGCTCTCACCGGGCTGCTGGAGCGCATGCAGATGCATCGTGATCCGGAGTCTCAGAAGGTCCTCCAGGACTGGCTGAAGGAACGAGAGGAGCTGAGggcCGTCACCAAGAACCTCTTCAACCCCCAGTTCGGGAGCATCTTCCGCACCTGCCACAACCCCACCTACTTCTCCCGCCGCCTGTGCCGCTTCTCGGACCTGTACATGGCCTCCCTCAGCTGCCTGCTGAACTACGACCTCAGCTACACCTTCTACCCCCGCCGCACCCCCCTGCAGCACGAAGCCCCTCTCTGGATGGACCAGCTGTGCACGGGCTGCATGAAGACCCCCTTCCTGGAGGAAATGGCGCACATCCGCTAAAGGGAGGTGTTCGAGTGGCGCCGCCCTGCTGGACACACTGAGATGTGCCGtctgacttattttttttttattttttattttttttggataTACGGAACAAAGACGTTGATTGTGAAGGAACCCGATACGTAGGCGGAGGGAAGCCTGTTACTGAGTGGATACGTTGTGAATCCTGACTTGAATTTCTGTttgagtttgtttaattttaggtGAAATGTGAAGTGGGGAGATTTTGTAGCAAATGCCAGCGGGAATAAACTGAGCTGTCAATCGATTTCCCCGTCGGATTGGAAAGGGGCCGGCGATTTGAGACTACATCCAGATCTGCCGGGATGGACCAGGACACTCCTGGTCTCGCGGGGCGCGCGGATCGCCATTGGGTCCGAGGAAGAGGACATGGGAGCTACTTGACACGGGGGGGACCGTCCCGGTGGCCAAGGCGGGACACCCAGGATAGAGGGGAAGTAGTGACGGAAGATTGTAGCAGATTTAGAATACCGCCGCCCCTCTGGTGTCTTCTGGAACTGCGCTTGCTGCCTTTCGCAGGGGGTTCGAGAACAGACTCCTTGCCCGATGCTCCCATTGCGATCTCGGCCTCTTGAAGAGGACGtctgtttggttttctttccgACGTGGGTCTCCGCACACGGCCCAATCCCGAGCTCATGAACTCCGCGCACAGCCGGATCGTGATCAAGaactctgctgctgcttttactttcgtttttttttcttcgagtgtctatatatatatatctatcccCTGACCAGTCGGTCTCCCTCTTGGGCtgctgcaggagagggagaaatTGACTCCCTCCTAAACCCTACAGGTGGCTTTTGACAGACGAGTGTGGGTTTGGGCTTGAGGTTGAAGGACAGGAGGGAGGTCTGTAGGAGACTGGAAGATGTTTCCTGTACAGATCTAGAACTTTTTCAGGGGTAGGGggacgttttttttgtttttttttttgcctactTAGGTTGAATAGGTGCTAAACAAAACAACCGAAAACTGAAAACTTTAAACTGCTATCTTCCTTTATAGCAATCCTTTAGCGTGTATATTGTGAATGCTGGAGAAATCgacaaagaatgaaaaagctcGTGGGTGGGGGGTGCAAGAAGGGAGAGCTCGGCCAACTTCTTAAACCCCTCGACAGAACCTCACCTGACCTTCGCGGAACGTGCTGGTTGCTTgttctccctcactccctcgtTTCTGTCGCATCTGTTCTCATTCACCGCAGTGCCTTCTGCTGAGCTGACCGATCTCCTTCTCCCCACTCCCCCCCGGCCGTGTCTTCGGTCTTGAAGATCTTGGGGTCGCCGCTGTGGTGGGACCGAACCGGAAAGGTCCGGGGGCAGAAGGGGACGGGAGGGCGGCGCCGAGAGAGAACCAGAGTGGGGGGAGCCGGAGTAGAGATCCACCCGGGGGGGGGCGCTCGGTAGTCCGCTGGaacgaaaaacaaaatggaggcGTACGATGACCCCGAAGAGAGAACCTTAAATTCCATAATGCCAGTGAATAACTAGCATTGGGAACCGATCTAAAGAATATGGGATTGGATCTGAAGAAAGCTGTTCTTGGTGACTGGAAATCCGCACAATACGGCACCCATCGCCACCGGTGGACATGCCAGAACTGAACACTGCCCGCTCTTCGCACAAGAAGCAGAACTGCCTTCGTTCCAGCTGAAGAACCTTTTGGGTCTGGGACTCGATTTCGGGGGGTACAGTCGTGGTGGGATGAGGtcccctctctctatatatatgtctatctacctacctatatatgtgtatgaatataaataaatataaatggctCGTTGGCCAGAAGGAGGCCGTTATCCGCGCTCTGTAAATGTCAGTCTGCTTTGTGCATCGCCTCCCtgtgtcactgtcactgtgtaCTGTTGACCGCTAAACGCACAACATGGTCCTCCTTTTGTCACTTCAAAACCATCCCCAGCGAGGATGCGTttccttttattcattttatttgctttattattatttttttaaccccgATCACTAACGAGGGACGCGGGGGGCTTTCTTCAGCACCACAGACTCCAAGCCCGGTCCGAGCTTAGAACTAGAGAGCCTCACGGCCACTGTATGAACTGCGACAAATTACGCTGAATGTGCTATTAAGGGCTCGGTCGCATCCTGCTCGCTTCAGTCGCGGTCGGCATAAACTGGGATGGGAAGAAAGCGTGTGGGGGAGTTCCTCTTCTCCTCGTCTGTATTGAAGCCGTCGAGCCGCACAGACCCTGGCGTCGGCCGTTCCTCCGTCTCGCTGGCACTGAGCTGCGGGCCGCACTTCCTCTGCAGGCTTCCTCAAGTCCTGCTCGGGCTGTTCGAGAGGGACGTTGCATGACCGCGCGATGAATCAAATCTCAAGAGCTGTAAACGCTGCCCAGTTTGAAATCTGTAGGagctttttaaagtgtttttatttcagtggcGTGGGTTTAGGACTTAAAGGAGGGTCACcacctttattttcttttgtattttttttcctcttcaatAAGCTAATGTAAAACCCTTTTCCCCGTGGGCCTGGGATCCGAGCAGACTGGAACTGCTTCCCGGGGGGTTGTTTGGGAGGCACATGCTGCACAGGGTGGCCAGAGACGgggagttgtgtgtgtttgtggtcaCACGATTGACTTTAAGGTACATTGTTTCAATCCTCAAACCACTCTTTGATCACCATCTACAGGTtatacacttattttttaagctcattttattttaggttttatttttaggaaCACGCCTGCAAAGTTCGATTTTCAGGTAATGCCTCTCCACAGTTTTCTTGATTTGTCTTAactgttttagttttacaaGCGAGATGCAAAAGCCACTGGACTCTCCTGTGACCCAGACCGCCGCACAAGCCCCCTCCCAGCTGACCCGTCTCTCACTGTGGCTTCCCCTCTCGTGTGGGTTTGTGTTTTACATACAGAACTGTACTGTTGATTTTGCAGTTTCTTCATTCCTTTGGTAAATCTATCCGTTTACAAatgttgcaattttaaaaacaataaaaacaagtgaaaacGGTA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72524 lncRNA upstream 255245 42629539 ~ 42636453 (+) True G58008
TU72499 lncRNA upstream 413586 42477715 ~ 42478112 (+) True G57987
TU72493 lncRNA upstream 423096 42468308 ~ 42468602 (+) True G57981
TU72470 lncRNA upstream 456546 42432920 ~ 42435152 (+) False G57964
TU72466 lncRNA upstream 456574 42432877 ~ 42435124 (+) True G57964
TU72671 lncRNA downstream 24515 42938007 ~ 42938874 (+) True G58123
TU72700 lncRNA downstream 93109 43006601 ~ 43010002 (+) False G58148
TU72699 lncRNA downstream 93132 43006624 ~ 43010050 (+) True G58148
TU72734 lncRNA downstream 299218 43212710 ~ 43213028 (+) True G58178
TU72753 lncRNA downstream 335911 43249403 ~ 43249641 (+) True G58195
AMCG00009625 mRNA upstream 3207 42887108 ~ 42888491 (+) True AMCG00009625
AMCG00009619 mRNA upstream 4979 42862696 ~ 42886719 (+) True AMCG00009619
AMCG00009620 mRNA upstream 29074 42862403 ~ 42862624 (+) True AMCG00009620
AMCG00009618 mRNA upstream 34718 42845136 ~ 42856980 (+) True AMCG00009618
AMCG00009617 mRNA upstream 169089 42707757 ~ 42722609 (+) True AMCG00009617
AMCG00009628 mRNA downstream 1288 42914780 ~ 42927057 (+) True AMCG00009628
AMCG00009626 mRNA downstream 47475 42960967 ~ 42972378 (+) True AMCG00009626
AMCG00009631 mRNA downstream 63637 42977129 ~ 43003322 (+) True AMCG00009631
AMCG00009632 mRNA downstream 137781 43051273 ~ 43052391 (+) True AMCG00009632
AMCG00009633 mRNA downstream 191987 43105479 ~ 43112950 (+) True AMCG00009633
TU72303 other upstream 813457 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1897039 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2786750 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2942498 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3454703 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1019460 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1473005 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1653873 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1671070 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1719258 44632750 ~ 44651967 (+) True G58600

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069929 False 2825 mRNA 0.46 14 NC_007119.7 23639124 ~ 23656730 (+)