RNA id: TCONS_00069929


Basic Information

Item Value
RNA id TCONS_00069929
length 2825
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_035660
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23639124 ~ 23656730 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCCCTCAACAAAGCTCTATCAGTTCCAACAGCAGTGGTTGTGCTGAACACGCGGGGCAAGTGCGAATGAAAGAAGTAAACAACTTCGTTAGGATAGTTTAGACATGGCTTGCAAAAAAATAGGAAGTTTTAGTAACGCAATGTGGCAAAGAGGCTCCAGCTGCAGAGTTTCCCTTTGCGCAGGATTGAATATTCCTGCTTTTGCATGCGGGAGCTTCACCTCGACTGGTTCAACAATGAACGGACAGAAATGCTGCAAAGATGGACAAAACTGTGGACCGACGAAACACTTGGCAGCTAATCATAATCCGGTTGCAGCACCAGTCACATCTCACAGACACCAGTTTGTGGGCAAAAGTAGAGGCGAAGAATCCCTGACCAAATCTGGCAGGGCTTTTTCATCCACGGCCCCGCAGATCAACAATAAAACATACCTGTGGGCAAGATACAATGAGATGAAACGGCTCGTGCACGATTTGATTCCTCCAGGAGTGTGCAGTCTCCTGAACCCCTCCACCATCTACGCCAATAATGAGGTGAATCTGGAGGAGGTGGACATCTACGGCTTTGACTATGATTACACGCTCGCACTTTACTCCAGCGCGCTGGACGAGATGATCTACAACAAGGCGCGAGAGTTTCTTGTTCAACACTACAAGTACCCAGAGGGAATCAGTAAGTACGACTACATTCCCAACTTTGCAACTCGGGGCCTTCACTATGACATCCAAAAGGGACTGCTGATGAAAATTGATGCTTTCCATTACATCCAATTGGGCACCGTTTATAGGGGTCTGAAGCCTGTCCCTGATGATGAGGTCATGAAGCTTTATGGAGGCTCAAATCATGTTCCCCTCCACCAAGTCAGCGGATTTTATGGCAAGGGTCCCAAAATGAAGCAGTTCATGGACGTTTTCTCCATCCCCGAAATGACTCTCCTGGCAGCTGCAAACGACTACTTCATCTCAAACGACATCGAGTACGACCCAGTGCATCTCTACAAAGACGTCTCCGATGCGATTGGAATGGTGCATATCAAGGGTTACATGTATAAATGGATTATGCAAGATCTCGAGAAATACATTCTGCGAGGAGACGAGACGTACGCTGTGCTGCACCGGCTGGCCAGTCAGGGGAAGAAGCTTTTCCTTATTACCAACAGCCCCTTCAGCTTTGTTGATAAAGGCATGAAGTACATGGTCGGAAAAGAGTGGAGGGACTTCTTTGATGTTGTCATTGTTCAAGCAGACAAACCACATTTCTTTAATGACTGCATAAAACCGTTCAGACGTTTGGACAGCAATGGAGACCTGCAGTGGGACAGAATTAAGACTTTGGAGAAGGGACAGATTTATAAACAGGGAAACCTTGTGGATTTTCTCAAGCTGACAGGATGGCGAGGATCCaaggttttttattttggagATCATCTCTACAGTGATTTGGCCGACCTGATGTTGCGTCATGGCTGGAGAACAGGAGCGATTGTTCCCGAACTGGAGGTGGAGACGAAGGTGGTGAACACAGAGCAGTACGCGCAGAGTCTCACGTGGCTGCAGGCGCTTACTGGGCTGCTAGAGCGCATGCAGATGTATCGGGATCCTGAGTCCAAGAAAGTTCTGCAGGAGTGGCTGAAAGAGCGAGAAGAGCTACGGGCCGTCACCAAGAACCTCTTCAACCCTCACTTTGGCAGCATATTCCGTACCTGCCACAACCCGACCTACTTCTCCCGCCGCCTGTGCCGATTCTCAGACCTGTACATGGCCTCTATCAGCTGCTTGCTCAACTATGACCTCTCGTACACGTTCTACCCCCGCCGGACCCCCCTGCAACACGAAGCACCCCTCTGGATGGACCAGCTCTGCACTGGCTGCATGAAGACGCCCTTCTTGGAGGAAATGGCCCATATTCGCTAAAACCCCCACCAAAGGTGCAAATCTGAACTGAAAAGTGAATGAGGGTTGTGTCTCTTTGGCAATGGAGACGTGGCACTTTCTGCGCTAACACCACATGCAACGGGGCCACCTGCTGGATGTTATGTTACAATGCATCTCAACGTTCTCAAGCCTTGGACGGTGAAAGACAAAGGCTTGTCGATGGATTCGTCCTAATGTTCTTACctcctaatttttttatttacatttgatgcTGTTGCATTATGTCTTACTAAACATAGTGTTGAGTGGTTTACAGttctctctcttttgttttggttttgtagATTAACCCTGTCGTCATGAGTGCTGTAGTCGCATCAGAGTGATGTTTGTATTAACATGAGTCATGATAACAGAATGGATACAAATAGACTATACTTGGGGTACCCAGATGTTTTTCAACTCTGGTTAGGCCAAAGTATTGCGCCGCTGGCCAAAAATGCACAATAAGAGTTACAAATACAGTAGGTCTGATTCCATGTATGATTAGGTCAAATAGCTTCTTAGATTTGGTGTCGTCATGTTACTTAATCTTTACACTACAGGAATAATGTAGCCTAGACTCGattgttttttaaacatgaaCTCATAATGCCAGTTGCCGCAGCTTTTTATGatttttgtttataaatcacAGCTGTTTTTACATACATGGAAGCTCCTGGTGGGCGAAACCaaatgctgttgttgtttttgaccTTGCCGGGCCTCACTGTTTGTGGCTTTAGACTAAGCTTCTGTACAATCAGAGCATTGTTTGCTTACATTTAAGTCTGTGAATAGCTATGCTGCTAAATTCGGTTTTCCAGGAACAAGAAAGATGTCATCTTTTTGTATGTACGTGCTCTACAatttataaaatcaaataaaaggcTTTGTATTAATA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008253 5'-nucleotidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-17 Predicted to enable 5'-nucleotidase activity. Is expressed in several structures, including immature eye; margin; paraxial mesoderm; tail bud; and yolk syncytial layer. Orthologous to human NT5DC2 (5'-nucleotidase domain containing 2).

Ensembl:

ensembl_id ENSDART00000083108

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072198 lncRNA upstream 166258 23462818 ~ 23472866 (+) True XLOC_035657
TCONS_00071929 lncRNA upstream 373451 23260411 ~ 23265673 (+) False XLOC_035651
TCONS_00069908 lncRNA upstream 373451 23260411 ~ 23265673 (+) True XLOC_035651
TCONS_00072196 lncRNA upstream 386516 23240267 ~ 23252608 (+) True XLOC_035648
TCONS_00069943 lncRNA downstream 81393 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069954 lncRNA downstream 179399 23836129 ~ 23848523 (+) True XLOC_035669
TCONS_00071930 lncRNA downstream 241993 23898723 ~ 23907373 (+) True XLOC_035671
TCONS_00069961 lncRNA downstream 626865 24283595 ~ 24291601 (+) True XLOC_035676
TCONS_00069974 lncRNA downstream 669296 24326026 ~ 24329469 (+) True XLOC_035677
TCONS_00069928 mRNA upstream 1093 23615132 ~ 23638031 (+) True XLOC_035659
TCONS_00069926 mRNA upstream 85265 23521974 ~ 23553859 (+) False XLOC_035658
TCONS_00069925 mRNA upstream 85342 23485079 ~ 23553782 (+) False XLOC_035658
TCONS_00069927 mRNA upstream 85342 23522006 ~ 23553782 (+) True XLOC_035658
TCONS_00069924 mRNA upstream 184547 23439340 ~ 23454577 (+) False XLOC_035656
TCONS_00069931 mRNA downstream 1896 23658626 ~ 23670494 (+) True XLOC_035661
TCONS_00069932 mRNA downstream 46734 23703464 ~ 23724276 (+) False XLOC_035662
TCONS_00069933 mRNA downstream 46950 23703680 ~ 23712257 (+) False XLOC_035662
TCONS_00069934 mRNA downstream 46968 23703698 ~ 23715046 (+) False XLOC_035662
TCONS_00069935 mRNA downstream 52550 23709280 ~ 23723436 (+) False XLOC_035662
TCONS_00069918 other upstream 250979 23382732 ~ 23388145 (+) True XLOC_035654
TCONS_00069909 other upstream 296126 23342883 ~ 23342998 (+) True XLOC_035652
TCONS_00069887 other upstream 489188 23147230 ~ 23149936 (+) False XLOC_035644
TCONS_00069870 other upstream 849475 22789531 ~ 22789649 (+) True XLOC_035634
TCONS_00069866 other upstream 1142822 22495431 ~ 22496302 (+) True XLOC_035631
TCONS_00069942 other downstream 81393 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069944 other downstream 81426 23738156 ~ 23742976 (+) True XLOC_035664
TCONS_00069946 other downstream 124275 23781005 ~ 23781394 (+) True XLOC_035666
TCONS_00069957 other downstream 260858 23917588 ~ 23920716 (+) True XLOC_035673
TCONS_00069958 other downstream 407480 24064210 ~ 24064295 (+) True XLOC_035674

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_01189138_01199101.mRNA True 2732 mRNA 0.44 14 CI01000010 1189138 ~ 1200021 (+)
bowfin (Amia calva) AMCG00009627 True 5091 mRNA 0.55 14 CM030126.1 42891698 ~ 42913492 (+)