RNA id: TCONS_00069928


Basic Information

Item Value
RNA id TCONS_00069928
length 3491
RNA type mRNA
GC content 0.46
exon number 16
gene id XLOC_035659
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23615132 ~ 23638031 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAAAACTCCACGTCCCATGATACACTGCGTCGGACACTCCTAGGTAATGACTTCCTCTCCAGAAAAAGCTGATATTGAAGAGACAGACtgaaaaaagctattattttgacACTCCGTTTTTGCTAAAGAATGCGGTGAAAAGTACTAAACGGCTCGTTTGACACTGCGTTTTGAAATGTAGCCATGGCAGCCGAACGGTCGTCCTGGTTTGCAGACCTGCACAGGCTGTAGTGAAAGCGATGCTGGGGGTTTGCTGAAGCCTTATGATATTCATTTGCCTTGTCCGCGGTGGGGCTTTAATATTGCTACGGAAGACAGTCGAGCAGCTTTATCTGATCTCGTTCCGTGATGGAAGAAGTCGATAGGATTTTAATTCACTCTCTAAGACAAGCGGGCACAGACATTGACGAGGATGTTCAGAGTGTGAAGCAGTTCACCAGTGAGCTGATCGTGGAGGCGGTGGTCAGATGCCTTCGGGTGATCGACCCAGCAGTGGGCAATGGCTTGTCCCACTCGCTGCCCCCTGGCATGTCTGCCCGCTTCAGACTGGGCATGAGCCTGGCACAGGCCTGTCAGGATGTTGGATTTAAAGGAGAAATTGGCTACCAGACATTTCTCTACAGCAATGAACCAGAGATACGCTCTTTGTTCATGTTTCTGGTTGAGAGGCTGCCCAGAGAGAGTGCAGAGGCCTCAGACCAGCCTGCAGGAAAGTCTGTGCTGTTGCAGAGAGCCATCGCTGCTCAAATTAAAGCGCAGTTGTCAGTGCCTTGGCTTCCACCGACCTGTAGACTTCCTGTTCATCGCAAAACACAGAGTTCTGGCCCCTGCCACAGTTTCCACGCCCAGCCGCTGAGCCTCCCATGTTCACTGAAGGTCTCTTCCAGGAAACAGCCAAAAGAGGTGCAAGAATACTGGAGGAATTATTTGTTGCCTGTGACCGCCCAGCCTTCCCAGCCTGCCTCAGTGCCAGCATCCCTCCTGGAGAACCACATCTCTGAACTCAGTGCCGCCCAAGAATGGGAGAGTGAATGGAACAGCCAAGGCCTCCTATCCAGACTCACACCAGAGGAGTACAGATCTCGAAAGAAAGCCCGGCTGCAAAAGCGAATCGAGGAGCAGCTTAGAACGGCAGCTCAGCCTCGTCCAGACACACACGGAGCCACGCGCTCCACTTCTGACCTCGCAGAGCTGCTGCAGTCATTCGGTGGAGCCTCCACTGGAGGAGATGTGCTGACCAAAGGCACACGTTTCACCCACACTGAGAAGTTCACCTTCACACAGGAACCGGAGAAAGCCGTCCAGCAGATGGCAGCAGCAGCAAGTGCTCTCCCCAGCTCTCAGCAGTCAGAGGAGGATCTAAAGGCTCAGCAGGAAGCTGAACTCTCTGCTCTGCAGCAACAGTTGCAACAACTCTCCGTCCAAATGGAAGAAGTGGGTGGAGACATTAAGCAGCTCACGGTGTCCATCCAGCAGgtGACAGATGAGCTGCAAACGAGAGAAGTGACTAACGCTGAGAGGGAGAATTCAgtcaaaataaaaagacagacCATTGACCTTCTTCCTGACGCTGAAAACAACCTGCTCAAATTACAGAGTCTGGTGGAGTCCAGCTCTAAACGAGTGGTTCAGTTGGCCTCACAGTGGGAGAAACACAGAGTCCCGTTGATTGATGAGCACCGCAGGCTAAAAGAGCTGTGCAGCAACAGAGAGTCTGAGTCCTCCAGGAAGCTGTCAGAGATCAAAGACCTGCATGACAAAATCCGACAGTCTGCCGAGGAGGCCAAAAAGAAGGAAAGCCTGTACAAGCAGCTGctAACAGAGTTTGAAACGCTGTCTAAAGATGTGTCTCGCTCTGCCTACACCATCAGGATCTTAGAGATCGTCGGCAACATAAAGAAACAGAAGGAGGAAATCACTAAGATTTTGTCGGACACAAAGGACTTGCAGAAAGAGATTAACGGCTTGACGGGGAAACTGGACCGAACATTTGCCGTCACAGATGAACTGGTGTTTAAGgacGCCAAGAAAGATGAATCCGTCCGCAAATCTTACAAGTATTTGGCTGCTTTACATGAGAACTGCACTCAGTTGATTCAGACCATCGAGGACACAGGAACCATCATGAGAGAAATCCGAGATCTGGAGGAACAGattGAGACTGAAAATGGCAAAAGGACAGTTAGCAATCTAGAGAAGATCCTTGAAGACTACAAGGCCATCCGTCAGGAGAACTCAGCTCTTGCTGCCAAGATCCGGGAAGGCTGAGGTCTGTCTCTCCGTCTATGTTTGACGGTACCAGAAAATGAAACCCTGGCCTGCTGAAATGAGAGCTGCTTCGAGAGACGACGGTTTGGCTCCATCTGCGTCAGCCCTCCATCCGAAATAATCCTCATCACGTCAGCAACTTTCAGCTCTTTATTGAGGGTTTTAACACAAGAGTTTTTTGCATCAAAATGACACAAATTTGAAGAAATATTAGTTAAAGCTAACTCTGATCATTGTGATGAGATTCAGTTTTTTAACAAAAAGCTTGGACTGCAATAATTTGGGAAGGACCGGTACTGGTGCTTCAGCTTGGTAAAACCTCTTTGTTATAAAGTGATAACCATATTCTGAAAGTTAGCCGTGGTCTCTGACTGTTGTCCATTTAAATGGGTTGAACTTCTCATGAACCGTACTAGTTTCGGACCGTTTGATTGTGCTTGGAGGATAGTGGGCTGATAACAAGTTAAAACACTCATGAACAGCTTACCTGTTTTGTATTAAAGCATTCATTTGATAACATATCTGTTTGTTTGGCTCTGATGGATCCTTTGATCTTGGTTCAAATATTCATCATTGAAAGTTATACTGTCACAAGAAGTACTGTCTGTAGGAAAACACATTTAAGTGTCTGATTGACTAACACTGATGATTGTCCCAATCAAAATGATTTTCAAGACTTTCATAGTTTATGCCTGTCTTTGGAATGTTTGATTTTAGAGATTATATGGAAGCGAATGTTTTGTAATTTACCATGACTTGTATACTGTGCATCTGCTCAATCTCTGAACATGATGTTCTGTTATTTCACCAAGCTGTCACCGGATGTTATTTTCTTGAGGACAGACTAACTTCCTGAGGAATCATCTATCTCTGATTTAGCATCAGGAATGAGGTTTTGACTTTAGAATGTAGATATTTGACCATTCAGTTTGTCAAGATGTTGTTTACTGTAATTATTTGAGTGGTGCTGCTCAATTTGGGAGAAAGTAAAGATACAGAATCTACATCAAAAGGAATGTTTTGTGGTTTACCACAAATCAGATTTTATATATGAAAACATGTTAATTTTTCCACTTGCTGTCCTTGGGAAGTTATtaacttatttgacaaaatatttctCATTTACATTACACTCCTATCTAatataaatgttactttaagaaactttttaaaaagtaaaagcaaTAAAATCATAGGCCTAAATggggtaaacacacacaca

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0097602 cullin family protein binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050913-93 Predicted to enable cullin family protein binding activity. Predicted to be involved in positive regulation of ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein transport. Human ortholog(s) of this gene implicated in Ritscher-Schinzel syndrome 2. Orthologous to human CCDC22 (coiled-coil domain containing 22).

Ensembl:

ensembl_id ENSDART00000099769

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072198 lncRNA upstream 142266 23462818 ~ 23472866 (+) True XLOC_035657
TCONS_00071929 lncRNA upstream 349459 23260411 ~ 23265673 (+) False XLOC_035651
TCONS_00069908 lncRNA upstream 349459 23260411 ~ 23265673 (+) True XLOC_035651
TCONS_00072196 lncRNA upstream 362524 23240267 ~ 23252608 (+) True XLOC_035648
TCONS_00069930 lncRNA downstream 15116 23653147 ~ 23655827 (+) True XLOC_035660
TCONS_00069943 lncRNA downstream 100092 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069954 lncRNA downstream 198098 23836129 ~ 23848523 (+) True XLOC_035669
TCONS_00071930 lncRNA downstream 260692 23898723 ~ 23907373 (+) True XLOC_035671
TCONS_00069961 lncRNA downstream 645564 24283595 ~ 24291601 (+) True XLOC_035676
TCONS_00069926 mRNA upstream 61273 23521974 ~ 23553859 (+) False XLOC_035658
TCONS_00069925 mRNA upstream 61350 23485079 ~ 23553782 (+) False XLOC_035658
TCONS_00069927 mRNA upstream 61350 23522006 ~ 23553782 (+) True XLOC_035658
TCONS_00069924 mRNA upstream 160555 23439340 ~ 23454577 (+) False XLOC_035656
TCONS_00069923 mRNA upstream 160555 23439340 ~ 23454577 (+) True XLOC_035656
TCONS_00069929 mRNA downstream 1093 23639124 ~ 23656730 (+) False XLOC_035660
TCONS_00069931 mRNA downstream 20595 23658626 ~ 23670494 (+) True XLOC_035661
TCONS_00069932 mRNA downstream 65433 23703464 ~ 23724276 (+) False XLOC_035662
TCONS_00069933 mRNA downstream 65649 23703680 ~ 23712257 (+) False XLOC_035662
TCONS_00069934 mRNA downstream 65667 23703698 ~ 23715046 (+) False XLOC_035662
TCONS_00069918 other upstream 226987 23382732 ~ 23388145 (+) True XLOC_035654
TCONS_00069909 other upstream 272134 23342883 ~ 23342998 (+) True XLOC_035652
TCONS_00069887 other upstream 465196 23147230 ~ 23149936 (+) False XLOC_035644
TCONS_00069870 other upstream 825483 22789531 ~ 22789649 (+) True XLOC_035634
TCONS_00069866 other upstream 1118830 22495431 ~ 22496302 (+) True XLOC_035631
TCONS_00069942 other downstream 100092 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069944 other downstream 100125 23738156 ~ 23742976 (+) True XLOC_035664
TCONS_00069946 other downstream 142974 23781005 ~ 23781394 (+) True XLOC_035666
TCONS_00069957 other downstream 279557 23917588 ~ 23920716 (+) True XLOC_035673
TCONS_00069958 other downstream 426179 24064210 ~ 24064295 (+) True XLOC_035674

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_01175042_01186800.mRNA True 4527 mRNA 0.43 16 CI01000010 1172985 ~ 1187302 (+)