RNA id: TCONS_00069926


Basic Information

Item Value
RNA id TCONS_00069926
length 2350
RNA type mRNA
GC content 0.52
exon number 17
gene id XLOC_035658
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23485079 ~ 23553859 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAGGGTTAAACCGCTGTCAATATTGTGAACATGATGTCATCTCTGCTTTTCGTCTTGAGTTTGTGTGTCTGGGGTTGTCATGGCAACACCCGCACAACACCCCGAGTGCACCTGTCATACAAAGAGTTACTGGAGACAAAAACCATTCGGCCGTTTAGTTTCTCCTTCAACACCAGTGACTACAGAATTCTGCACATGGACCAAGACCAGGGCCGACTTTATCTGGGCAGTCGTGAATATCTGGTCTCTCTAGACATGCAGAATGTCAATAAGGAACCACTTATTATTCACTGGCCGGCGACAACGCAAAGAAAAGGGGAGTGTAAATTAACTGGCAAAGGAGGACAGGGAGAGTGTGCTAACTTTGTCCGTCTGATTGAGCCGTGGAACAGGACTCACCTGTACACCTGCGGCACTGGGGCTTACAAACCCATCTGCACCTTCATCAACAGAGGCTGGAGAGctgagGAATACCTCTTCCGGCTGGTTCCTGGTTATGTGGACTCTGGAAAAGGAAAGTCTCCTTATGATCCCCGGCAGGAGAACGCAGCAGCTCTGATCAATGGGAACCTGTATTCTGGGGTGCATGTGGACTTCATGGGTACAGATCCAGCCATCTTCCGAACCTTAGGAGACCGTCCCGCTGTCAGAACAGAGCAGTATGACTCCCGATGGCTGAACGAGCCAGTTTTCATAAAAATCCAGAAGATTCCAGACAGTGCAGAGAAGAACGATGACAAGCTTTACTTCTTCTTTCGGGAGAAGAGTCTGGATGCGTCAGGAGGCAGCGCTCCGAGTGTGCTTGCTAGAGTCGGACGGGTCTGTCTGAATGATGATGGAGGTCAGAGGTCACTGGTGAATAAGTGGACGACGTTCCTCAAAGCTCGGCTGGTCTGTTCTGTGATCGGTGCAGATGGTGTGGAGACCTACTTTGATGAACTGAgggatgttttcatccagaGGACCCATGATGAACGAAACCCCATTGTGTATGCAGTCTTCTCCACAGCTGGCTCAGTGTTTAAAGGTTCTGCAGTTTGTGTTTACTCAATGTCTGACATCAGAAATGTCTTCAATGGGCCCTTCTCACATAAACATGGCCACAACTACCAGTGGACTCCTTACACTGGCAAAATCCCTTATCCTCGGCCAGGGACTTGTCCCGGAGGAACTTTCACCCCTGATCTCCACACCACTAAAGCCTTCTCAGACGAGGCTGTAAACTTTGTCCGTGCCCATCCGCTGATGTACCAACCTATATATCCCATACACAAGCGCCCCCTGGTGGTCAGGACTGGAGTCGACTACCGTTTCACCACCATTGCTGTTGATCTGGTGGACGCTGTGGATGGAAGATACGAGGTGCTCTTTCTGGGCACAGATCGTGGAACAGTTCAGAAGGTGATTGTCTTACCAAAAGACATCAGCACAACAGAAGAGCTCATATTGGAAGAGGTGGAAGTTTTTAAGACTCCAGCAGCTGTCAAAACTCTGAAGATTTCTACTAAAAGGCAACAGTTGTACGTGTCTTCAGAAAGGGGTCTCACCCAGGTGTCGCTGCACAGGTGCGCCGTCTATGGAAAGGCCTGCTCTGACTGCTGTCTGGCACGAGACCCCTACTGTGCCTGGGATGGAGAGCACTGCTCTGCTTTCACCCCTGCGACCAAGAGGAGAAGCAGAAGGCAAGATATCAAACATGGAGATCCTCTACGGCAGTGCAGAGGATTTAACGCTAAAGTAGAGAAGCGACTGCGGGAGACAGTGCAGTTCGGGGTGGAGGGGAGCAGCACCTTCCTGGAGTGTCAGCCAAGGTCTCCACAGGCCACTGTCAAATGGCTCTTCCAGAAGGACGGCAGGAGAAAAGCTCTCAGTCGAGACAAAGAGGTTCTGAAGACGGGTCATGGAATCCTGCTGAAATCTCTCACCCAATCAGACGCCGGTCTTTACCATTGCCTAGCAACCGAAAACAACTTTAAGCACACCTTGGCTCGCATCTCTCTCCGCATCCTGGACAGAGAGATTGTAGAGGCGCTGACTGAGTCAGACATCCCGATAGACCCAGAGCACCGGCGCCACCATTCCCATCAGCACCCTccacccccaccaccaccacctcaaGCCCACCCACCGGCTCTCCCACTCCACCCACAGCCTGAAGTGCGTCTCATCAACCAGTACTGCCAGTCCTACAGGCAGCAGATGCAGAGTCAGCCACAAAAAGCCAAACGCAACAACCGAAGGCACACAGGAGAACCAGAGGAGGAGCAGTGAATAGAGGAGCACCTGCTGACCATGTCCTGAATATGTATCATTATGTACTTCTACCAGGCAGATTCCTATGTGGCCCC

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050513-4 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Acts upstream of or within neural crest cell migration. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in brain and head.

Ensembl:

ensembl_id ENSDART00000188130

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072198 lncRNA upstream 49108 23462818 ~ 23472866 (+) True XLOC_035657
TCONS_00071929 lncRNA upstream 256301 23260411 ~ 23265673 (+) False XLOC_035651
TCONS_00069908 lncRNA upstream 256301 23260411 ~ 23265673 (+) True XLOC_035651
TCONS_00072196 lncRNA upstream 269366 23240267 ~ 23252608 (+) True XLOC_035648
TCONS_00069930 lncRNA downstream 99288 23653147 ~ 23655827 (+) True XLOC_035660
TCONS_00069943 lncRNA downstream 184264 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069954 lncRNA downstream 282270 23836129 ~ 23848523 (+) True XLOC_035669
TCONS_00071930 lncRNA downstream 344864 23898723 ~ 23907373 (+) True XLOC_035671
TCONS_00069961 lncRNA downstream 729736 24283595 ~ 24291601 (+) True XLOC_035676
TCONS_00069924 mRNA upstream 67397 23439340 ~ 23454577 (+) False XLOC_035656
TCONS_00069923 mRNA upstream 67397 23439340 ~ 23454577 (+) True XLOC_035656
TCONS_00069922 mRNA upstream 68201 23436411 ~ 23453773 (+) False XLOC_035656
TCONS_00069921 mRNA upstream 116869 23395469 ~ 23405105 (+) True XLOC_035655
TCONS_00069920 mRNA upstream 126990 23391263 ~ 23394984 (+) False XLOC_035655
TCONS_00069928 mRNA downstream 61273 23615132 ~ 23638031 (+) True XLOC_035659
TCONS_00069929 mRNA downstream 85265 23639124 ~ 23656730 (+) False XLOC_035660
TCONS_00069931 mRNA downstream 104767 23658626 ~ 23670494 (+) True XLOC_035661
TCONS_00069932 mRNA downstream 149605 23703464 ~ 23724276 (+) False XLOC_035662
TCONS_00069933 mRNA downstream 149821 23703680 ~ 23712257 (+) False XLOC_035662
TCONS_00069918 other upstream 133829 23382732 ~ 23388145 (+) True XLOC_035654
TCONS_00069909 other upstream 178976 23342883 ~ 23342998 (+) True XLOC_035652
TCONS_00069887 other upstream 372038 23147230 ~ 23149936 (+) False XLOC_035644
TCONS_00069870 other upstream 732325 22789531 ~ 22789649 (+) True XLOC_035634
TCONS_00069866 other upstream 1025672 22495431 ~ 22496302 (+) True XLOC_035631
TCONS_00069942 other downstream 184264 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069944 other downstream 184297 23738156 ~ 23742976 (+) True XLOC_035664
TCONS_00069946 other downstream 227146 23781005 ~ 23781394 (+) True XLOC_035666
TCONS_00069957 other downstream 363729 23917588 ~ 23920716 (+) True XLOC_035673
TCONS_00069958 other downstream 510351 24064210 ~ 24064295 (+) True XLOC_035674

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00009615 True 6543 mRNA 0.45 16 CM030126.1 42722627 ~ 42739824 (-)