RNA id: TU102742


Basic Information

Item Value
RNA id TU102742
length 566
RNA type TUCP
GC content 0.51
exon number 5
gene id AMCG00010664
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38457774 ~ 38465061 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgtgcaataaaagttaattattaaccaccaccaccaccatgacttTATAAGAGTGATTCCAGTCCCCTACTTCGTACTGAAACAGCCGAGAGAAACAGTGTGATAATGGCCGTCACTTCTCAGCCAAGGGCCAGCGGAGGGTACCCCGCCACCGAATGGCAGACGGGGATCTGCGACTTCTGTGACAACTGCGGGACGTGCTGCTATGGGTTCTGGTGTTACCCCTGCCTGGGCTGCACCATTGCCAGAGACATGGACGAGTGCTGTCTCTGTGGACCCACCATGGCCATGCGCAGCGTCTACAGGGCCAAGTACAACATCAAGGGATCCCTGTGTTCTGACTTCTTGTACACTAACTTCTGTGGGGTTTGTGCCACCTGTCAGCTGAAGAGAGATATTGACAGGAGAAAGGAACAGGGCATCTTCTGACATcccaaagctgcagcagcactgtAGACACGCGGCCCATGGGAGAGAAATCTCACCCAGAAGCAGAGATGAGGAACCAGGCCGTCTACACTTCAGTCTCTTCACTATATTCTTTATTAAAGGGTTTTTAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102714 lncRNA downstream 32792 38423479 ~ 38424982 (-) False AMCG00010666
TU102715 lncRNA downstream 32792 38423479 ~ 38424982 (-) False AMCG00010666
TU102612 lncRNA downstream 170239 38285755 ~ 38287535 (-) True G82252
TU102443 lncRNA downstream 959661 37497718 ~ 37498113 (-) True G82126
TU102442 lncRNA downstream 963061 37492723 ~ 37494713 (-) True G82125
TU102767 lncRNA upstream 57954 38518665 ~ 38526795 (-) True G82347
TU102788 lncRNA upstream 165815 38626526 ~ 38626937 (-) True G82362
TU102892 lncRNA upstream 343115 38803826 ~ 38828301 (-) True G82435
TU102893 lncRNA upstream 359795 38820506 ~ 38820945 (-) True G82436
TU102927 lncRNA upstream 566350 39027061 ~ 39027421 (-) True G82469
AMCG00010662 mRNA downstream 14485 38425843 ~ 38443289 (-) True AMCG00010662
AMCG00010666 mRNA downstream 32707 38423485 ~ 38425067 (-) True AMCG00010666
AMCG00010665 mRNA downstream 36114 38403007 ~ 38421660 (-) True AMCG00010665
AMCG00010663 mRNA downstream 55891 38386532 ~ 38401883 (-) True AMCG00010663
AMCG00010668 mRNA downstream 72073 38380527 ~ 38385701 (-) True AMCG00010668
AMCG00010667 mRNA upstream 16199 38476910 ~ 38483324 (-) True AMCG00010667
AMCG00010678 mRNA upstream 103365 38564076 ~ 38607856 (-) True AMCG00010678
AMCG00010677 mRNA upstream 147863 38608574 ~ 38622991 (-) True AMCG00010677
AMCG00010679 mRNA upstream 174348 38635059 ~ 38636319 (-) False AMCG00010679
AMCG00010680 mRNA upstream 179857 38640568 ~ 38641283 (-) True AMCG00010680
TU102417 other downstream 1049674 37405880 ~ 37408100 (-) True AMCG00010623
TU102168 other downstream 1773956 36677697 ~ 36683818 (-) True AMCG00010602
TU101930 other downstream 2741102 35714951 ~ 35716672 (-) True G81716
TU101338 other downstream 5457775 32995450 ~ 32999999 (-) False AMCG00010509
TU101107 other downstream 6486019 31954384 ~ 31971755 (-) True AMCG00010487
TU102754 other upstream 16499 38477210 ~ 38483422 (-) False AMCG00010667
TU102793 other upstream 174379 38635090 ~ 38636502 (-) True AMCG00010679
TU102829 other upstream 194207 38654918 ~ 38688260 (-) True G82392
TU103099 other upstream 1044873 39505584 ~ 39509159 (-) False G82607
TU103101 other upstream 1044873 39505584 ~ 39509159 (-) False G82607

Expression Profile