RNA id: AMCG00011262



Basic Information


Item Value
RNA id AMCG00011262
length 468
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00011262
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16031074 ~ 16033025 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTTAAAGATGACCGATTGGGACAGCATGTACCCACTTTACATCCAACCTCCGAAGAGCTGACAATTGCTGGGATGACATTCACCACCTTTGATCTGGGTGGCCACGCACAAGCTCGTAGAGTATGGAAAAACTACCTCCCTGCCATCAATGGTATTGTCTTCCTTGTGGATTGTGCCGACCTCCCAAGATTGGCCGAATCCAAAATAGAACTCGATGCACTAATGACAGATGAAACTATTGGAAATGTGCCTATCTTGATCCTCGGTAACAAGATTGATCGACCAGAAGCCATCAGTGAGGAGAAGTTACGTGAAATGTTTGGATTGTATGGACAGACAACGGGCAAGgGCAATGTTCCGATGAAGGAGCTGAACACAAGACCACTAGAAGTGTTTATGTGCAGTGTCCTGAAGAGGCAGGGATACGGGGAAGGCTTCCGTTGGCTGGCGCAATACATTGACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131821 lncRNA upstream 33342 15996377 ~ 15997732 (+) True G105390
TU131802 lncRNA upstream 46995 15978689 ~ 15984079 (+) False G105373
TU131795 lncRNA upstream 158420 15863032 ~ 15872654 (+) False AMCG00011255
TU131796 lncRNA upstream 158420 15863032 ~ 15872654 (+) False AMCG00011255
TU131797 lncRNA upstream 169384 15859758 ~ 15861690 (+) True G105370
TU131877 lncRNA downstream 23140 16056165 ~ 16056449 (+) True G105434
TU131879 lncRNA downstream 29889 16062914 ~ 16063749 (+) True G105436
TU131881 lncRNA downstream 34208 16067233 ~ 16067442 (+) True G105438
TU131886 lncRNA downstream 72561 16105586 ~ 16110381 (+) True AMCG00011268
TU131891 lncRNA downstream 99733 16132758 ~ 16132987 (+) True G105448
AMCG00011258 mRNA upstream 77297 15948639 ~ 15953777 (+) True AMCG00011258
AMCG00011255 mRNA upstream 157585 15863039 ~ 15873489 (+) True AMCG00011255
AMCG00011252 mRNA upstream 175357 15853886 ~ 15855717 (+) False AMCG00011252
AMCG00011253 mRNA upstream 178690 15850701 ~ 15852384 (+) False AMCG00011253
AMCG00011256 mRNA upstream 204505 15825613 ~ 15826569 (+) True AMCG00011256
AMCG00011268 mRNA downstream 72625 16105650 ~ 16106386 (+) False AMCG00011268
AMCG00011270 mRNA downstream 86843 16119868 ~ 16124691 (+) True AMCG00011270
AMCG00011269 mRNA downstream 100427 16133452 ~ 16141505 (+) True AMCG00011269
AMCG00011267 mRNA downstream 110814 16143839 ~ 16148914 (+) True AMCG00011267
AMCG00011276 mRNA downstream 200580 16233605 ~ 16240750 (+) True AMCG00011276
TU131803 other upstream 46995 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 175290 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 178685 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 708649 15320780 ~ 15322425 (+) False AMCG00011241
TU131514 other upstream 1410540 14619690 ~ 14620534 (+) True G105139
TU132132 other downstream 945467 16978492 ~ 16982241 (+) True AMCG00011293
TU132321 other downstream 1751138 17784163 ~ 17788050 (+) True G105778
TU132460 other downstream 3079885 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 3189030 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 4062204 20095229 ~ 20162966 (+) False G106139

Expression Profile