RNA id: TU131877


Basic Information

Item Value
RNA id TU131877
length 285
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G105434
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16056165 ~ 16056449 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGATGTATGTACTGGACACTTACCTCCTGCTAAATCCTCTTCGATCAGCTGGATCTGGAGGTGGAAAATCTTCTCCTGCAGATCACAGAGGGAATGTTTCATCTTCTCTCGTCTTGTCACCATGTAACACAGGTTCCTAACCTGCCAGGGCGACAAACGCACACACAGCTGTTTCTAGCAGAAGGATAAAACACCAGTTCTGCCCCGAGTGAGGATGAAGGCCTGCCCTGACAAGTCACCATTTACATCTGGATGAAACCGATACTTCAGCGGTGTTCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131821 lncRNA upstream 58433 15996377 ~ 15997732 (+) True G105390
TU131802 lncRNA upstream 72086 15978689 ~ 15984079 (+) False G105373
TU131795 lncRNA upstream 183511 15863032 ~ 15872654 (+) False AMCG00011255
TU131796 lncRNA upstream 183511 15863032 ~ 15872654 (+) False AMCG00011255
TU131797 lncRNA upstream 194475 15859758 ~ 15861690 (+) True G105370
TU131879 lncRNA downstream 6465 16062914 ~ 16063749 (+) True G105436
TU131881 lncRNA downstream 10784 16067233 ~ 16067442 (+) True G105438
TU131886 lncRNA downstream 49137 16105586 ~ 16110381 (+) True AMCG00011268
TU131891 lncRNA downstream 76309 16132758 ~ 16132987 (+) True G105448
TU131909 lncRNA downstream 143600 16200049 ~ 16200299 (+) True G105466
AMCG00011262 mRNA upstream 23140 16031074 ~ 16033025 (+) True AMCG00011262
AMCG00011258 mRNA upstream 102388 15948639 ~ 15953777 (+) True AMCG00011258
AMCG00011255 mRNA upstream 182676 15863039 ~ 15873489 (+) True AMCG00011255
AMCG00011252 mRNA upstream 200448 15853886 ~ 15855717 (+) False AMCG00011252
AMCG00011253 mRNA upstream 203781 15850701 ~ 15852384 (+) False AMCG00011253
AMCG00011268 mRNA downstream 49201 16105650 ~ 16106386 (+) False AMCG00011268
AMCG00011270 mRNA downstream 63419 16119868 ~ 16124691 (+) True AMCG00011270
AMCG00011269 mRNA downstream 77003 16133452 ~ 16141505 (+) True AMCG00011269
AMCG00011267 mRNA downstream 87390 16143839 ~ 16148914 (+) True AMCG00011267
AMCG00011276 mRNA downstream 177156 16233605 ~ 16240750 (+) True AMCG00011276
TU131803 other upstream 72086 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 200381 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 203776 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 733740 15320780 ~ 15322425 (+) False AMCG00011241
TU131514 other upstream 1435631 14619690 ~ 14620534 (+) True G105139
TU132132 other downstream 922043 16978492 ~ 16982241 (+) True AMCG00011293
TU132321 other downstream 1727714 17784163 ~ 17788050 (+) True G105778
TU132460 other downstream 3056461 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 3165606 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 4038780 20095229 ~ 20162966 (+) False G106139

Expression Profile