RNA id: TU132460


Basic Information

Item Value
RNA id TU132460
length 2400
RNA type TUCP
GC content 0.47
exon number 5
gene id AMCG00011328
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19107273 ~ 19117369 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATTTCAGTGGCTTAGctgaaaaacagcacaaaaaagaaagaaaacatgagCACTAAGAGGATGGCAATCTGGCATCACATGGAggaaaatatgcatattaaaagAAGCTGAAGATGCAGAGTGGGGATTCCAAAGAGGACAAGCAAGCATCATCAGCACAGTCTACCCCCAGTGGGACCCCCCAAACCTCTCCAAAACAGAAACGCAGGGGCTGGTTCAGCCAGGGCTCGACAACATCCCTCACCAGTTCTGAGTTCGGCAGTGCCAATTCCAGTGTAGACATGGGCGGAGGGGAAACCGACAAGTGGAGCATCTTTGGGCCTCGACCGGTTGTGCAGAAATCTACCACTGACCCAGGAGGGTATGCCCTGCAGGCGTACCGGGGCGCTCAGAAGCCGACCCCCATGGAGCTAATGAAAGCACAAGCCACCCGGATGGCCGAAGACCCCGCCAACCTGAAACCACCCACGATGGATGTCCCGGGCATGGAGGGCAGGAGGCAAGCTCCCCGCTCGCACAAACTCAAGCCTCGAGACATGAATGTGCTCACCCCTTCTGGCTTCTAGCAACATTCCCTCTGAACAGTCACGCAGGCCTGCTGCTCCCCTCAAACACCCCTCCAGGAACTGCTTGGATACCCACCCTCGACACAAAAGGTGTTACCCCAACCCTGGTGCTTTGTCATAATTCCCATTTCATTCCTTGTCAATCTGAAAAGGATTCATCATTTAGATCTCTTCTAGGAAGCATTATAGATCaccaaagtaaaaataaagtatttatttctccctttacaatgtgactttttttgtgtgacaaGTGACCTAATTGAATGGTCGGAACCCTCTCATTAATAGCGAGGTAGTGCAGCCAGCAGCACATTGATTGAGTGGTAGTCTCTCAGTGTAGCCGTTCCTCTGCATGGTGGTGGACCACTCGCTCATGTTCCCATTTCCCCCACAGACCCGTTTAACTGGAAGAGTAATTATGCTGATGCTTGTAACAATGACTGTAATGAAATGCTTAGTCAGGGCTACAATGTGGTCTGCTTCCATCTATTATTTAGGTTAGGTGGGGTAGCtaaaataatttcatttattGGTTGTCTTCAGCATCACCCAAATCGATTTTAGAGGGATCTCCTGTCTACCATTTGAAATtagttttgtgtatatataagtgGTAGATAGTTGTGATGCACATAGTACTCTGAAGGATAAGACATTGTGGCATTAACCTTTTAATTTGGACTGTAACTAGTGCAGTTTTGTCTTAAGTGCTcacttattttcatatttggtttttgaaattgtatgaGATGTTTGTGATgtccaaataaattaaatcctaACATGACTATTCTCATTTATACTGTAGGGGAAGATctgcttgtgtgtttatttaaatatagccAAATGAGGGCGGGGGGGTTTGCTCACTTCAAGACTTTCCTGCCTTGAGGGAGAAACAGCCAGTAGATTTGATATGCAGCCATCTGAGTCTGctctgcaaaatgtattcttgtgtATGAAGTTTTAATTAGTggtacaaaaatatacaatttcccCATTAGAGGTCAGTCTCCCTTCTcatattaaaactttaaaagcaaGCATTAACTATCCTTAAAAACGACTTCCATTAAGAGAGACTGGAAGAGAGCTGTACGCTCCTCCAGTTGTGAATTCATAGGCGCGCCCAGGGCGTCGGACACTCGGCTGTGAAACCCCCGCGTGGCATCCTGCACGGCACGCAGGCTGATCTTGTCGTGCTCTGTGACGATGGGCAgtgtgctggtgctggtgcgcTCAGTGACGGAGCATCTCAGGTGAGCTGGGTTACCTCCCCATAGCTGACGAACAGCATGAACAGCAGATGCAGAAGTTCATTCCACCGTCGCCACTGGTCTGCAATGCCATCCTGggggaaaagggaaaacatgATCAGGAAGACAACCATGCAGGTCAGTCAAAGGCTGCATTGCAATGGGTCACAGTGTGCCAGAGTCAGGAAACACCTACTGTAGGATCTGAAGGGAGGGTTGTGTTTTGGAAGAAGTGAAGCAGGAGATTCAGGGACATGggcatctttgttttttgtgggcAGGCATGGTCCAGCAACAGCTCAGCCAGTTTGCACTGCAGTAACTTGCTCTCCATGGTCTTCAGCAGCAGTAATCTAGGAGCAGGAGAGATGAATGCAGAATTTAACCCAACAGTTAACTGTGTATCGGTTCTACATTGTTACAGATTTTTAATGTGTGCTGACCTGTGGCGTCGGTGGGGAACAATGCTAATGAGTGTGTGGAACATTTCAAGGGAGACTTTACTGGAGCTGCAGGTCGGGGAGCGGTCCACCTCTATGGCCAGGGCCAGCATCTTCTGGAGAAGAAACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132421 lncRNA upstream 495845 18616850 ~ 18617065 (+) True G105858
TU132361 lncRNA upstream 865142 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 1079885 18032755 ~ 18033025 (+) True G105794
TU132337 lncRNA upstream 1112567 17999636 ~ 18000343 (+) True G105792
TU132318 lncRNA upstream 1344689 17765891 ~ 17768221 (+) True G105776
TU132641 lncRNA downstream 470824 19588193 ~ 19588973 (+) True G106022
TU132698 lncRNA downstream 685802 19803171 ~ 19803475 (+) True G106071
TU132775 lncRNA downstream 839636 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 860878 19978247 ~ 20014348 (+) True G106138
TU132777 lncRNA downstream 869835 19987204 ~ 19995987 (+) False G106134
AMCG00011329 mRNA upstream 22476 19054134 ~ 19090434 (+) True AMCG00011329
AMCG00011327 mRNA upstream 70709 19017222 ~ 19042201 (+) True AMCG00011327
AMCG00011326 mRNA upstream 113026 18947352 ~ 18999884 (+) True AMCG00011326
AMCG00011325 mRNA upstream 290500 18802638 ~ 18822410 (+) True AMCG00011325
AMCG00011319 mRNA upstream 844253 18259800 ~ 18268657 (+) True AMCG00011319
AMCG00011331 mRNA downstream 33113 19150482 ~ 19151729 (+) True AMCG00011331
AMCG00011343 mRNA downstream 151601 19268970 ~ 19279256 (+) True AMCG00011343
AMCG00011344 mRNA downstream 169257 19286626 ~ 19289195 (+) True AMCG00011344
AMCG00011338 mRNA downstream 193938 19311307 ~ 19313365 (+) True AMCG00011338
AMCG00011340 mRNA downstream 255078 19372447 ~ 19396764 (+) True AMCG00011340
TU132321 other upstream 1324860 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 2130669 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 3128831 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 3257126 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 3260521 15850646 ~ 15852389 (+) True AMCG00011253
TU132491 other downstream 104686 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 977860 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 994711 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 1001206 20118575 ~ 20162966 (+) False G106139
TU132823 other downstream 1178642 20296011 ~ 20339087 (+) False AMCG00011365

Expression Profile