RNA id: AMCG00011338


Basic Information

Item Value
RNA id AMCG00011338
length 777
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00011338
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19311307 ~ 19313365 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTGTAAGTTTCTAAAGCCACATGAATGTGTTCCTTGCCTCTCAGAGCACTTGGACCTGGGAAAGAAGATCAGTACCCCTCAGGATGTGATGATGGAAGAGCTGGGCTTGCTCTCGAATAAGGGGTCCCGGATGTTCCACGAGAGACAGAAAAGGGTAGATAGATTCACCCTGGAAAACATCAGAGACAGGCCGATCATGgtgcagagcagcagcagcataaAAAACCAGGAGACCCCAGAGGGCGGTAAAGAAAATTTTCGCTCTGAGATTTTCATTCCTCAGCCTGGGAAAGAACATCTCCATCCaactttgaaaaaaacaacatttaaaagtacTGGGAGCCCAAATTTCATTGCCCCAGGTACAGGAGCTAAtgATCagatatataattttctttctttccaagGTTACGCTGGTCCACTGAAAGAAATCCCCCATGAGAAGTTTAACGTAACGGTCATCCCCAAATCGTACCGGTCCCCATGGCGGGACGCACCGGGTCAAAACGAGCTCCTTGCTACATTAAATATTCAGCTGCCAGAGCCCCCACAGAAGCCAGGCGCCACCACCTTCCGGTGCTTCAACAGAGCACCTATACCATTTGGAGGAACAGCTGGCAGTGAGAGGACATTCCCTTTACCTGGGTTCGAGCTCTCCCAAGCACAGACAGAACCCAGCCTGAGTTGGATGCGAATCAGTAACCGACCCAACTTCAATCGAGCACCTCGTGGCTGGGGAGTGAAGTACTCCCCCGAGTCTAATGAGCTGTGA

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132421 lncRNA upstream 694242 18616850 ~ 18617065 (+) True G105858
TU132361 lncRNA upstream 1063539 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 1278282 18032755 ~ 18033025 (+) True G105794
TU132337 lncRNA upstream 1310964 17999636 ~ 18000343 (+) True G105792
TU132318 lncRNA upstream 1543086 17765891 ~ 17768221 (+) True G105776
TU132641 lncRNA downstream 274828 19588193 ~ 19588973 (+) True G106022
TU132698 lncRNA downstream 489806 19803171 ~ 19803475 (+) True G106071
TU132775 lncRNA downstream 643640 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 664882 19978247 ~ 20014348 (+) True G106138
TU132777 lncRNA downstream 673839 19987204 ~ 19995987 (+) False G106134
AMCG00011344 mRNA upstream 22112 19286626 ~ 19289195 (+) True AMCG00011344
AMCG00011343 mRNA upstream 32051 19268970 ~ 19279256 (+) True AMCG00011343
AMCG00011331 mRNA upstream 159578 19150482 ~ 19151729 (+) True AMCG00011331
AMCG00011328 mRNA upstream 195860 19107273 ~ 19115447 (+) False AMCG00011328
AMCG00011329 mRNA upstream 220873 19054134 ~ 19090434 (+) True AMCG00011329
AMCG00011340 mRNA downstream 59082 19372447 ~ 19396764 (+) True AMCG00011340
AMCG00011337 mRNA downstream 97246 19410611 ~ 19414281 (+) True AMCG00011337
AMCG00011341 mRNA downstream 109094 19422459 ~ 19427557 (+) True AMCG00011341
AMCG00011342 mRNA downstream 120963 19434328 ~ 19438204 (+) True AMCG00011342
AMCG00011339 mRNA downstream 137650 19451015 ~ 19475876 (+) True AMCG00011339
TU132491 other upstream 88886 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 193938 19112910 ~ 19117369 (+) True AMCG00011328
TU132321 other upstream 1523257 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 2329066 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 3327228 15963340 ~ 15984079 (+) True G105373
TU132810 other downstream 781864 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 798715 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 805210 20118575 ~ 20162966 (+) False G106139
TU132823 other downstream 982646 20296011 ~ 20339087 (+) False AMCG00011365
TU132939 other downstream 1047843 20361208 ~ 20367223 (+) True G106242

Expression Profile