AMCG00011341


Basic Information

Item Value
gene id AMCG00011341
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19422459 ~ 19427557 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011341
TAAGGACTGGTTTCAGTTCTGCTCACCCCTCCTATACAGCGGACTGAGAAAGGGCAGGCTCTTCCTTATTTCTTGAAGTTTTTAAACTGTGCGCAGCCTGATCAGCATCTTTATCATCCGAGAAGCACCTGCTGAGGACGTGCCAGTGCGGACAGTTGCAAGGATGGCTGAGGGTTCAAGCGAGTCTCTTTTGAGGAATGAAGTCCCCCCCAGTGATGAGACTGTTGTGTCAATGCAAAACGGACAGACGGGaGCCTTGTCCAACCGTGGGTACAAAATCGCTGGCTTTACCCTGCTGGCATGCGTGCTGATTGCAGGCCAAGCCATCACTGCATACTTTGTGCTTTCTCAGAAGGATCAGATCTCAAATCTGGAGCAGCACACCCAGAGTCTGAAGCAGCAGCTGAACACTCGCAAACAATCATCACCATCTGTCCCCAAGATGCTGCATATGCCAATGTTCAAAATGCCCCTGCTCCTAGATGACACAGAGAAGCCAAAGAAGACCCCCATGAAGAAACTGGAAAATACTGCCACTGTCAGCCTGGAGAAGCAAGTCAAGGACCTTCTGCAGGACCAGAACCTTCCTGAGTTCAATGAGACTTTCCAGGGGAACCTGAAGAGCATGAAGGATCAAATGGAGGAGTCCGAGtggaagGACTTTGAGTCCTGGATGCACAAATGGCTGGTCTTCCAGATGGCCCAGCAGAAACCACCTCAGCCAACCCCTCTTCCTGTGGAGCAGACTACTCCTATTGAAGAGTCCGGAATTCAAACCAAATGCCAGGTGGAGGCCAATTCCAAGACAGTGCATCCTGGGGTTTTCCGCCCCAAATGTGATGAGCAGGGTAACTATGAGCCATTGCAGTGCTGGGACAGCACCGGCTTCTGCTGGTGTGTCGACAAGGACGGAAAGGAGGTGCCCGGTACTGCAACCCGCAGTGAGAGACCTCAGTGTGATGGTGGTGCAGGACCTGCACGTATGATGGCCATGCCAAGCATTCCCAGAATGCTGGAGATGAAAGatGAGTAAAATAACTGGGAGGAATGCACGTCAAAGACAGCTATGAAGCGCTCTACAAATTTGATATACTGATGTATTAATGGATATATTAATGAATGCTTATTTGAAACTAACCGCTTTTGGCAAGCAGATAAATACTTTAAGGAAAAtgggatttagtttttttctgaggGACTAAAgtaactttgttttaaaatctttacCTAATAATTGTATTGACTGTAACAGTGAACCATGTTGGACTGACCTGTTACATTTTGTGATTGTGGTGAAGTCTTTTGTGTTGAATGATCCCTTGCACTTAGTTATACATGCCATTTCAAGGCATCTTAATTACAAACGGGCACAAAATAATTAGATCACCATCCACAAAAAGTACTTTGCATTAAAACCACAATTGGTAGCTGTAGAAATCTGCCACACACTGAACTCCACATCTCCACAAACATGCATGGAAACACCAACCCTAAATTCAAGTCTTCactgcagttattattatttttttaatttaaaatcttcaactgaatgatttgtttattagatttaagaaaatattctCTTTCTTTTACCTAACGTGCTTACAAGTTAAGATGTATTGAAGTTTTAAGAGGGCTAAatgatgtaaatgtatgtgaagtgagaaaataaaagatggTATTTCTAACCAGCTGCTTTTGACGGAGTTATGTGTTCAGTAtggcatattttaattttaatagttCCTTTCCAAAACAATTTGAACAGCCACTGGTacaaaacaatcacaaacaTTAGGCCCTAATACATACAAAGTTGAATCTTGGGAGATGATCATACCAACTGaatatttaaagtttattactatttatcaattatacaatcccttttagtttcttttgtatcattgtgtgcatttTATGGAACCGTTAAGTTAAATGTTGCTGCATTACACCTAGGGTCAAGTGTAACTAATCTCCAACAAAGGTTAACTTGTACCATTCAGTAATTATCCTTTGTACACCAACATGTGACATGAGTTATCTTGGAGtgatatataatatgtaatggCTGCTAAAAAAATGGTGAATAGGGTGGAATATAATTGAAAACCCTTAATAATTTGTCTGGGTTAAAATGATTAACAttaactgactgacactgaaCTAATACTGAGATTAACCTTAAAACTGACTTTGCGTTTTCATTGAGTTAAGTTGTTTCTCTATGCCCTCTTTGTTGCTTCTGGGCAATTCTAGAAGGCAGACAGGCAGCATGTGGAAAGTCCTGGACATGCCACACAATTcagcatacaaaaacaaaaacgattCTGTA

Function

GO: NA

KEGG:

id description
K06505 CD74, DHLAG; CD74 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011341 True 2335 mRNA 0.41 9 19422459 19427557

Neighbor

gene id symbol gene type direction distance location
AMCG00011337 rps14,RPS14,LOC100194652 coding upstream 8178 19410611 ~ 19414281 (+)
AMCG00011340 ndst1,LOC108278613,LOC108431357 coding upstream 25695 19372447 ~ 19396764 (+)
AMCG00011338 NA coding upstream 109094 19311307 ~ 19313365 (+)
AMCG00011344 LOC101481134 coding upstream 133264 19286626 ~ 19289195 (+)
AMCG00011343 NA coding upstream 143203 19268970 ~ 19279256 (+)
AMCG00011342 NA coding downstream 6771 19434328 ~ 19438204 (+)
AMCG00011339 LOC107748112,LOC107588766,LOC107590070 coding downstream 23458 19451015 ~ 19475876 (+)
AMCG00011346 NA coding downstream 53181 19480738 ~ 19484146 (+)
AMCG00011347 NA coding downstream 58102 19485659 ~ 19499205 (+)
AMCG00011351 NA coding downstream 173808 19601365 ~ 19609025 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 805394 18616850 ~ 18617065 (+)
G105811 NA non-coding upstream 1174691 18175355 ~ 18247768 (+)
G105794 NA non-coding upstream 1389434 18032755 ~ 18033025 (+)
G105792 NA non-coding upstream 1422116 17999636 ~ 18000343 (+)
G105776 phykpl,LOC100691570 non-coding upstream 1654238 17765891 ~ 17768221 (+)
G106022 NA non-coding downstream 160636 19588193 ~ 19588973 (+)
G106071 NA non-coding downstream 375614 19803171 ~ 19803475 (+)
G106134 NA non-coding downstream 529448 19957005 ~ 19995987 (+)
G106138 NA non-coding downstream 550690 19978247 ~ 20014348 (+)
G106277 NA non-coding downstream 1187881 20615438 ~ 20615641 (+)
G105916 NA other upstream 200038 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 305090 19107273 ~ 19117369 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 1634409 17784163 ~ 17788050 (+)
AMCG00011293 plac8l1 other upstream 2440218 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 3312078 16105586 ~ 16110381 (+)
G106139 LOC108275110 other downstream 667672 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 868454 20296011 ~ 20339325 (+)
G106242 NA other downstream 933651 20361208 ~ 20367223 (+)
G106613 NA other downstream 3913751 23341308 ~ 23341765 (+)
G106618 NA other downstream 3928505 23356062 ~ 23356559 (+)

Expression


Co-expression Network