AMCG00011339 (LOC107748112,LOC107588766,LOC107590070)


Basic Information

Item Value
gene id AMCG00011339
gene name LOC107748112,LOC107588766,LOC107590070
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19451015 ~ 19475876 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011339
CGAGGAGACGTGGAACGGCTTCACAAGTGCGGACGCATCgacccagcagcagcagcagcagcttctcagaaaTGGGCTTGTGTTAATTGCTCTCGCTTCAGCTGCACAGGTTGCAGGGTGTGTCATTGTATTCCCCTTGGCATGCTAGATCCTCTCTCGCTGTTTGCAAAAGTGTGCTGGGCAGAGTTGTCTTGGCAGCAGTTGGGAGGCAGTGAGATGTACTGCAGTTAACTGAATTTAGGCTGGAAAACTACTCACCTCTGGGCTCCAACATGCTCGGGAAAGACTACATGCTGGCTATCATCATAGTCAACTATGATGATAACCTCTGGAATGACCAGAACCTGGAGCCAGACTCTGACCTCCCACCTGGCTGGAGGACCATCCGGGACAGCACTGGCACCTACTACTGGCATGTTCCCACGGGCACGACCCAATGGCAGCACCCTGCGTACAGCTCTGATGGAGACCAGGCAGCAGTCAATGGATTTTCCACTGCAGACTACAAGGAGCTCACTTCCCTGGCAGGAAGAAGACTATTTCTGCACCAACACTGACCCTGACTCCAAGTGCTTCGCTGTGCGCTCTCTGGGTTGGGTGGAGATCCCAGAAGAGGAACTTACTCCAGGCAAGAGCAGCATTGCTGTCAATAACTGCATCCAGCAGCTGTCGCACAGTAAGTGTGAGGGCCGAGACGCCATGGGAGCCTGGGGGGAGGGCCAGGACATGGTGATGATTCTGAAGAAGGACACTCTTAGTTTGGTTGACCCAGTAGACCACAGCTTGATCCACTGTCAGCCCATCATTAACATCCGAGTGTGGGGTGTAGGCTGCAACAATGGCAGaGACTTTGCCTTTGTAGCCAATGACAAAGACACGTGCATGCTGAAATGCCATGTGTTTCGCTGTGATGTTCCTGCCAAGGCCATCGCCACTGCTCTCCATGAGATGTGCTCAAAGATAATGTCTGAACGAGCAACAACCTACCCCTCAATGCCCAGGTCCCTCACCATGGAGAGTATTTCCCCAGAGGATTTGCCACTGCAAGtGGACTTCCTGGATGCAGTGAGACAGAGTAAACAGAAATTTCAAGTGCAGTACATTGGACACCTGCCTGTTGCCAGAGCCATGGGGATGGAAGTGCTGAACAGAGCAATTGAAAATGTCATGGACTCAGCTGATAGAGATGAATGGGAGCCCATTGCTATCCATGTGTCTGACACTGTTTTGTCACTGTGGAAAGGAGAGGATGGTGACGACCCATTCTGGGAATGCCAGGTGAGGTACCTGACTTTCCTGGGCGTGGGACAGGACACCCACACCTTTGCGGTGATCGTGGACGCCGGATGTCAACGCTTCGAGTGCCATGTGTTCTGGTGCGAGCCGGATGCAGGCAATGTCTCCGAGGCCGTGCAGGCTGCCTGTATGATTCAATACCAGAAATGTTTGGTGGCCCAGACTCCACCTTTGAAATCCAAAATGTCTCGAGCCCACACCAAAGTGAAGCGCACCGCCTCCATGGACAGCTCGGCCTTCAGCCCCCACCGCCGTGGAAACTCACCCCCCAAGTTTGGGACTTCTAGCATGAGAAAGGGGGTGCTGGCTTTCTTCGAGACCTTCAGAAACAAACAGTCTGCGGTTCCAATGCCTTAGCACTGCCACAGACAGGGACGTGGGGCCGAGGGACAGCGCATCTCATGGGGAGGGAAAAGGGATGCAGACAGTCTGCCTTCAAATAATGCTCAGCAGTATGTGTGGGATTTTAGATTTCCTAATGGGGATAGGGGTaagcataaaaaaagaaaatcaatacacaacGAATCTGAGACAAGTTTAATTTTCCCTGTTTTTAAGGGTGTCAGTTGTATTGCCTCAGTAATGATATACATATCTTAACAGGGCCCGTTTCAGGTGCAATTTTAAGATGAGAATTGAGGTGCTGTTTTTTCACATTCCATACCTCTCCTGTAGTGGCTTGGAATATAACGTTAAATGCAAGAACAAAGGGGGTGAGGGTACCTGACTTTTAATGTATATCAGCAGACTGACACTacacaacataataaaatgaactattcccccaaaaaaatatatcactgGTGGCAAAACTGTTTGAACTGCTCAGTAAAGATTAAACTGCAgatgaagatttttttattgcattattgcaTAGTACTGTACACTCAGTACTGTTTTAACAGCCCAGGTattactttttaacttttaaattttGCTCTACAATGTAAATGTTACTGTGATAGAAGGGTGAAAGATATCACATATCACTAGGAATAAACTGTCGTTCTTTGTCTACTGATATTATTGCACAACTGATATCtgtttttacaaacaaacaaacaagaaagctGTGATATTCAGTGGTAGAAAGTTCATAAAATTCAAAGTGGGAAAATAAGGAAGAATTTTACTCAGAAAAAAAACGATCTTgtgaaaaatgatttattttgtaataactaTTGTATTTTGCGTaacattggtttaattaaactgtgtttatttatttacttacatatttatttattgtatgtctCAGTCAATGTAGAAGATGCTATGTACTCAATCATTTATAGCATCGCTCACATAGATATTGGTAATGTATAAGCCACAGTAATAATTTGTATCCTGAGAATTCGATATAGGATGTCCCTGAAATGGTCTGACAGCAAGTTAAAGGCATTGAACTCCTGAAGAGTTATGCATGAACATGTGTTTCATCAAAGTGGGGTGGACCGcttactttgtttttctgttttacttttcttgaattaaaatgtatgtaatgcagGTGGAATTCAAGGGAAGCTCCCCAAATCAGGAGCGCCTAAACACCTGGTTAACGTTTACCTTCATTTCCTATGTCTTACTCCAAATCTACATGCTCACTTTCACTTGGAAATGCAAAAATgcttgaatgttttaaatgctcaTAATAACAATTAACATTTAGCATTGTAGCCAACAAAAAAGTGTAATCACTTAATTTATTAGGATAAATGAACATTTGAACGTGGTAAAATATAAGAAACCAGTGTATGCTGTTTTGGGGTAACAGGACAATGCTGATGCATGTGGTTTCTCCTACTTACTCTAAAATGCTGTTTTCTAGTGACCCAGATCACTGAGTGTGGGGGGTTCAGATATAAATGCCAGTATTCTGGGGAATGGATTTCATTTTGTACTGAATTGCTCTTTGCtccaaaaacatatacataactgtattataaaaaaacaactcagGTCTCCTTCTTACTTAATATGAAAATGGAATGGTAATGACTGCGTTCTAGCATGtaataacatgtttattaaaatgcctAATTAAGGagagtttgtttgaaatgctaTCATAACGATTCATGTAGCACATTAtgtggttttgctttttatacTACCAGTGGACAAAGTGCACAAAGGGTAGTAGAACATAATGTATGTGGAATAGatcc

Function

NR:

description
PREDICTED: amyloid beta A4 precursor protein-binding family B member 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011339 True 3467 mRNA 0.44 11 19451015 19475876

Neighbor

gene id symbol gene type direction distance location
AMCG00011342 NA coding upstream 12811 19434328 ~ 19438204 (+)
AMCG00011341 NA coding upstream 23458 19422459 ~ 19427557 (+)
AMCG00011337 rps14,RPS14,LOC100194652 coding upstream 36734 19410611 ~ 19414281 (+)
AMCG00011340 ndst1,LOC108278613,LOC108431357 coding upstream 54251 19372447 ~ 19396764 (+)
AMCG00011338 NA coding upstream 137650 19311307 ~ 19313365 (+)
AMCG00011346 NA coding downstream 4862 19480738 ~ 19484146 (+)
AMCG00011347 NA coding downstream 9783 19485659 ~ 19499205 (+)
AMCG00011351 NA coding downstream 125489 19601365 ~ 19609025 (+)
AMCG00011352 NA coding downstream 144106 19619982 ~ 19629426 (+)
AMCG00011353 ik,LOC107692978,LOC107661680 coding downstream 366297 19842173 ~ 19887630 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 833950 18616850 ~ 18617065 (+)
G105811 NA non-coding upstream 1203247 18175355 ~ 18247768 (+)
G105794 NA non-coding upstream 1417990 18032755 ~ 18033025 (+)
G105792 NA non-coding upstream 1450672 17999636 ~ 18000343 (+)
G105776 phykpl,LOC100691570 non-coding upstream 1682794 17765891 ~ 17768221 (+)
G106022 NA non-coding downstream 112317 19588193 ~ 19588973 (+)
G106071 NA non-coding downstream 327295 19803171 ~ 19803475 (+)
G106134 NA non-coding downstream 481129 19957005 ~ 19995987 (+)
G106138 NA non-coding downstream 502371 19978247 ~ 20014348 (+)
G106277 NA non-coding downstream 1139562 20615438 ~ 20615641 (+)
G105916 NA other upstream 228594 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 333646 19107273 ~ 19117369 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 1662965 17784163 ~ 17788050 (+)
AMCG00011293 plac8l1 other upstream 2468774 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 3340634 16105586 ~ 16110381 (+)
G106139 LOC108275110 other downstream 619353 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 820135 20296011 ~ 20339325 (+)
G106242 NA other downstream 885332 20361208 ~ 20367223 (+)
G106613 NA other downstream 3865432 23341308 ~ 23341765 (+)
G106618 NA other downstream 3880186 23356062 ~ 23356559 (+)

Expression


Co-expression Network