RNA id: AMCG00011340


Basic Information

Item Value
RNA id AMCG00011340
length 3927
RNA type mRNA
GC content 0.49
exon number 14
gene id AMCG00011340
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19372447 ~ 19396764 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTTCTGCGGCAGAGTGCGGCGGCTCTTCCGGCAGCTCACGCTCCAGACGagcctgctgctgctcttcGCCTTCTGCATGGTGAGCGTCTTCGTCTCGGCCTACTTCCTCTACGGGGTCAAGCGGGAGCTGGAGCCGGCCGGGGACGGGCCGCCGCAAGACTGCGACGACCCCAAGGTCACCCCCTCACGCTTGCTCCCCCTGAAGACGATGAAGCCGGCTGACACCTCGCGCACAGACCCAGTGGTGCTGGTTTTCGTGGAGAGCCTGTACTCTCAACTTGGCCAGGAGATCGTGGCCATCCTGGAATCCAGCCGATTCAAATATAGGACCGAGATCTCCCCGGGAAAGGGGGACATGCCCACCCTCACGGACAAGGACAGGGGCCGCTTCACCCTGGTCATCTACGAGAACATCCTCAAATACGTTAACTTGGATGCCTGGAACCGAGAGCTACTAGACAAATACTGTGTGGAATACGGAGTGGGAATAATCGGTTTCTTCAAGGCCAATGAGAACAGTTTGCTCAGTGCCCAGTTAAAGGGCTTCCCGCTGTTTTTGCACTCCAACCTGGGCTTGAAGGACTGCAGTGTGAACTCCAAGTCCCCCCTCCTGTTCATCACAAAAGCTCACGAGGTCGAGCAGGGCCTATTGCCTGGCGATGACTGGACCGTCTTCCAGTCCAACCACTCCACCTACGAGCCCGTGCTGCTGGCCAAGACCAAGTCTGCAGAGAGCATCCCCCAGCTGGGCGTGAGTGCCGCGCTGCACACCTCCGTGGTGCAGGACCTGGGGCTCCACGACGGCATCCAGCGTGTCCTCTTCGGCAACAACCTCAACTTCTGGCTGCACAAACTGGTCTTTGTGGACGCCGTGTCCTTCCTGACAGGCAAgcgtctctccctgtctctggaCCGCTACCTGCTGGTGGACATTGATGATATCTTTGTCGGCAAAGAGGGCACACGCATGAAGGTCCCGGATGTAAAGgCTCTGCTGGAGACTCAGAATGAGCTACGCACCTATGTTCCCAATTTTACCTTCAATCTTGGCTTCTCAGGAAAGTTTTTTCACACTGGTACGGATGAGGAGGACAAGGGGGACGACCTTTTGCTGTCTTATGTGAAGGAGTTCTGGTGGTTCCCGCACATGTGGAGTCACATGCAGCCACATCTTTTCCACAATCAGACCGTGCTAGCAGAACAAATGATGCTCAACAAGCGTTTTGCCACTGAGCATGGTATCCCCACTAATATGGGCTATGCAGTGGCCCCCCATCACTCTGGAGTGTATCCTGTCCATGTGCAGCTCTATGAGGCCTGGAAGAAGGTTTGGGGGATCAAGGTGACCAGCACAGAGGAATACCCCCACCTGAAACCTGCCCGCTACCGCCGCGGCTTCATCCACAGTGGAATAAGTGTTCTCCCAAGGCAGACCTGTGGCTTATTCACACACACGATCTTCTACAATGAATACCCAGGCAGCCCCAAGGAGCTCGATAAAATCATTAATGGTGGGGAACTCTTCCTCACAGTCCTGTTGAACCCTATTAGCATTTTCATGACCCACCTGTCTAACTATGGCAATGATCGGCTCGGGCTGTACACCTTCAAGAACCTCATCAAATTCACTCAGTCCTGGACCAATCTGAAGCTGCAGACTCTGCCTCCCGTCCAGCTCGCCCAACGCTACTTCCAGATCTTCCCTGAGGAGAGAGACCCCCTCTGGCAGGACCCTTGTGAAGACAAAAGGCACAAAGATATCTggtcaaaagaaaaaacttgtgACCGATTTCCAAAACTACTCGTCATCGGTCCACAGAAGACAGGTACCACAGCTCTCTATCTCTTCTTGGGTATGCATCCTGATCTCACCAGTAATTATCCAAGCAAGGAAACCTTTGAAGAAATCCAGTTCTTCAATGGACACAACTACCACAAAGGAATAGACTGGTATATGGAATACTTTCCCCTTCCCTCCAACACCAGTTCAGATTTTTACTTTGAGAAGAGTGCCAATTACTTTGATTCGGAGGTGGCACCAAAGAGGGCAGCTTCTCTCTTACCCAAGGCCAAGGTCATCACTATACTCATCAACCCTGCAGACCGGGCCTATTCCTGGTACCAGCACCAGCGCGCTCATGACGACCCAGTAGCACTGAAGTACACTTTCCATGAGGTAATCACGGCCGGCCACGATGCCCCCCTCAAACTCCGCATCCTACAGAACCGCTGCTTGGTGCCAGGCTGGTACGCTACCCACCTTGAGCGATGGCTAAACTACTACCACTCCaaccagaTCCTGGTCCTGGATGGACAGCTGTTGAGAACTGAGCCAGCACTGATCATggataaaatacagaaatttcTGGGGTTGACAAATATCATTAATTACCACAAAATCCTGGCGTTTGATCCCAAGAAAGGGTTTTGGTGTCAACTTCTAGAAGGAGGGAAGACCAAATGTCTGGGGAAGAGCAAAGGAAGAAAGTATCCCGAGATGGACTTGGATTCCCGAGCTTTCCTGAGAGACCACTACCGGGAGCACAATATTGAGCTGTCGAAGCTGCTGTACAAAATGGGACAGTCGTTGCCTAGCTGGCTTCGGGAGGAGCTGGTGAATGCGAGGTAGCAAGGACGGACACtcgagagcgagcgagagagagagagagagagagagagagaggggggcggGTACTTGATCTGCCAGCTGCTGAACTCATACGCTGATATACCTGACTGACAGGacctgagagagacacaggCTGGTACCAAGGACTGGCCCAAAGCCTTGGCTTTGTGACGGAACAATTTGGGCCGCTGGGGGAATGGCGATGAGGGGGAGAGTGAGCAATTGGTGAACAAGCTGAGAACTCGGTCGTACTTCTACTATTGTAGAGCTGCggtcctcctccttctcctccccgGGGTGTAAAGGAGCTGCGATGGGGGGGAAAGGCACACGTACAAACAACCTGGATAGCACAGGAGCAGGCAAGACCAAGGGGAGGGCAGTGGAGGATGCATTTCAGCCCAAACTCCCCCATTTACCCTCTTCAGTCAGCAGAGCAACTGAATCTTCATCTCTGGAGTGCCAGCCTAGCATATACACTAGCCATTAAGGATCTACAAGTGCCAGGATGGAATGTTCATTCCCTGATAATGTTGACAATAagaggttttttgttttgttttttcttattattttaggttttttttaagcgttgttgttgttgttgttgttgttctgttttcttaattatCAAAGCCTGTAGTGCTATAGGTACAGTACCATAGAGTATTCAGGTAACTGGAAAACAAAGTTGgtgagtttttattattattttaaacaagattttaaagtggcattttttttttttttatcacggcaaacaacaacaacaacaacaaaagattttaaaaaattatagCAATGTCAGCACAATGTGAAACGGGATAATTCAAAAGTGggttttttaaatatgagaatatttttattatagagtattaaaaaggaaagcaaaagtgCATGTATGAGAGGAATGGGAAGTGGTGATACTGCAAAGAGAGTCAGTCTAGACTGTTTTAATGCAACCAAACACCTGGTGATCCACTGattttggattatttttttatttcagagacACTGATATTTGAAGTAGTATTCTGGGCGAAGCCTATCTGAGTATACAGCCAAAAAACGGGCTGTAAATTTCACTGTGGGCATTGTAGATATATACAGAGAGATTAATTTGCCTACAGTGAAAATTGGGTCCAGTCTTTGCAGGTTGGAAAACGgtcaaaaaacacaagattccgaatttaatttccctttattaagataagatttttttttttaaatctgacttTGATCTTCACAgatcattcaaaacatttagcacagtctgtcttttttttttttttt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity molecular_function

KEGG:

id description
K02576 NDST1; heparan sulfate N-deacetylase/N-sulfotransferase NDST1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132421 lncRNA upstream 755382 18616850 ~ 18617065 (+) True G105858
TU132361 lncRNA upstream 1124679 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 1339422 18032755 ~ 18033025 (+) True G105794
TU132337 lncRNA upstream 1372104 17999636 ~ 18000343 (+) True G105792
TU132318 lncRNA upstream 1604226 17765891 ~ 17768221 (+) True G105776
TU132641 lncRNA downstream 191429 19588193 ~ 19588973 (+) True G106022
TU132698 lncRNA downstream 406407 19803171 ~ 19803475 (+) True G106071
TU132775 lncRNA downstream 560241 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 581483 19978247 ~ 20014348 (+) True G106138
TU132777 lncRNA downstream 590440 19987204 ~ 19995987 (+) False G106134
AMCG00011338 mRNA upstream 59082 19311307 ~ 19313365 (+) True AMCG00011338
AMCG00011344 mRNA upstream 83252 19286626 ~ 19289195 (+) True AMCG00011344
AMCG00011343 mRNA upstream 93191 19268970 ~ 19279256 (+) True AMCG00011343
AMCG00011331 mRNA upstream 220718 19150482 ~ 19151729 (+) True AMCG00011331
AMCG00011328 mRNA upstream 257000 19107273 ~ 19115447 (+) False AMCG00011328
AMCG00011337 mRNA downstream 13847 19410611 ~ 19414281 (+) True AMCG00011337
AMCG00011341 mRNA downstream 25695 19422459 ~ 19427557 (+) True AMCG00011341
AMCG00011342 mRNA downstream 37564 19434328 ~ 19438204 (+) True AMCG00011342
AMCG00011339 mRNA downstream 54251 19451015 ~ 19475876 (+) True AMCG00011339
AMCG00011346 mRNA downstream 83974 19480738 ~ 19484146 (+) True AMCG00011346
TU132491 other upstream 150026 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 255078 19112910 ~ 19117369 (+) True AMCG00011328
TU132321 other upstream 1584397 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 2390206 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 3388368 15963340 ~ 15984079 (+) True G105373
TU132810 other downstream 698465 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 715316 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 721811 20118575 ~ 20162966 (+) False G106139
TU132823 other downstream 899247 20296011 ~ 20339087 (+) False AMCG00011365
TU132939 other downstream 964444 20361208 ~ 20367223 (+) True G106242

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000055_00816853_00831631.mRNA True 3478 mRNA 0.51 13 CI01000055 816213 ~ 831787 (-)