RNA id: AMCG00011306


Basic Information

Item Value
RNA id AMCG00011306
length 1566
RNA type mRNA
GC content 0.39
exon number 6
gene id AMCG00011306
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17752774 ~ 17755758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGACCTGAAACTCTTTCCGTACAGACTGTTTCCAAGCAACCAGGTCGCCTCCAAGGCAACTGGAAATGCGCTGTGGAGCCGCGGACTGAGCAAAAGCCTGGGTACCTGTTGTCTGGGAGAGACATGGAAAAGGAGATGCCGCAGCTGCAGATGCCCCCCCCTCGGGTGTACGTGGAAAGGACTCTGGCGTTGATTAAACCAGATGTCATTCACAAAGCAGACGAAATTGAAGACATTATTCTACGAGCCGGCTTCAGTATTTTGCAGAAAAGAAAGTTACACCTCAGCCCTGAACAATGTAGtgacttttatgcagaccaatATGGCAAACTGTTTTTCCCAAGTTTAACTGCCTTCATGAGTTCTGGTCCGATCATTGCCTTGGTCCTGGCCAGAGAGCAGGCCATTGCTCATTGGAAAAGTCTCATTGGACCTGCAAATAGCACGAAAGCTAGAGAAACGCACCCAGAGAGTTTAAGAGCCATCTATGGGACATCTGACCTAAGGAATGCAGTCCATGGCAGTGAAAGCTTTtcaacagcagagagagaaatacagttCATGTTCCCTGGATCAATTATTGAGCCTATCCCATTGGGAAGTGCAGCCAAGGATTACCTTAGCAGATTTATAAACCCCACACTGCTAGCAGGGCTGACTGAACTCTGCAAAAGAAAGCCAGAAGATCCATTTACCTGGCTAGCTGATTGGCTGATAGACAATAACCCCAATAAGCCTAAAGTGCAACATGGAGTAGTGACTGAAGAGATTGAGTAAAGGAAGAGTTACACACCAATGGAGTATAATCTGATGTTAATGAAATGTCatgttagattttatttttgtataaagtTACTAAATACTAATACTCTTCTTTGTTTGCTACATTTAATGAACATGAAGGCTTGTCGGTAGGTTTACTTTGATAGTAGTGTtctgttttgtacatttatttaatatatcattattGATGAGTgattaaaagtgaaaatatgCAGTAAATACCTGCAATGCATATACATTACAACAAATCATATTCAAACCcttgtataaaaacagaagcatATACATTTGTTGGCTCTTCTGTTTGGGAGAAGTTACACCGATGTTGAGAAGGGTGTGTATTTCTATGTGGAGAATTGTGTGACTGTATTGAACGTGAAAACCGTGTAAACTGgggaattaatgttttttttgtttgtttcttttttgatttGCTTGATTTCTAAGCAGTGAATGAGAGTTAATTCTAACAGATGCTCAAGAACACTATAATTGTGCTTCAGTATTTATTGGGAATCTGTAGAATGTCCTGTAATGCATGGTTTAATagttgaaaaacataaaataaaagctaacCATATATCTCTTTATGTATATTAGCAATGTAGCAGAATCATGGTAGTGATGTGTCACATGTGCCTACCCATACATCTCTGGACTAAATGGAGAGGAACTTCTTGTTCTAATAAAGTTCTTACTGTAGAcatagcattttcatttttgtattatattaatgcTGACCTTTTTTCTAGCAACACTTGTATAATTggcttaatatata

Function

GO:

id name namespace
GO:0048515 spermatid differentiation biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K20790 NME5; nucleoside diphosphate kinase homolog 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132310 lncRNA upstream 1290 17751250 ~ 17751484 (+) True G105769
TU132287 lncRNA upstream 10387 17734990 ~ 17742387 (+) True G105756
TU132235 lncRNA upstream 373914 17378620 ~ 17378860 (+) True G105715
TU132204 lncRNA upstream 440706 17309759 ~ 17312068 (+) True G105684
TU131997 lncRNA upstream 1027621 16724688 ~ 16725153 (+) True G105538
TU132318 lncRNA downstream 10133 17765891 ~ 17768221 (+) True G105776
TU132337 lncRNA downstream 243878 17999636 ~ 18000343 (+) True G105792
TU132340 lncRNA downstream 276997 18032755 ~ 18033025 (+) True G105794
TU132361 lncRNA downstream 419597 18175355 ~ 18247768 (+) True G105811
TU132421 lncRNA downstream 861092 18616850 ~ 18617065 (+) True G105858
AMCG00011310 mRNA upstream 2354 17745662 ~ 17750420 (+) True AMCG00011310
AMCG00011312 mRNA upstream 173058 17571125 ~ 17579716 (+) True AMCG00011312
AMCG00011308 mRNA upstream 184546 17563585 ~ 17568228 (+) True AMCG00011308
AMCG00011307 mRNA upstream 196404 17544765 ~ 17556370 (+) True AMCG00011307
AMCG00011309 mRNA upstream 326276 17417595 ~ 17426498 (+) True AMCG00011309
AMCG00011305 mRNA downstream 2068 17757826 ~ 17761783 (+) True AMCG00011305
AMCG00011324 mRNA downstream 314643 18070401 ~ 18076037 (+) True AMCG00011324
AMCG00011320 mRNA downstream 336358 18092116 ~ 18098073 (+) True AMCG00011320
AMCG00011323 mRNA downstream 444883 18200641 ~ 18211863 (+) True AMCG00011323
AMCG00011321 mRNA downstream 464288 18220046 ~ 18244145 (+) True AMCG00011321
TU132132 other upstream 770533 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 1768695 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 1896990 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 1900385 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 2430349 15320780 ~ 15322425 (+) False AMCG00011241
TU132321 other downstream 28405 17784163 ~ 17788050 (+) True G105778
TU132460 other downstream 1357152 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 1466297 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 2339471 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 2356322 20112080 ~ 20162966 (+) True G106139

Expression Profile