RNA id: AMCG00011321


Basic Information

Item Value
RNA id AMCG00011321
length 6484
RNA type mRNA
GC content 0.41
exon number 29
gene id AMCG00011321
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18220046 ~ 18244145 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAACCCACGTTACACTAGAAGATGCTCTGTCCAATGTGGACCTCCTGGAGGAGCTCCCTCTCCCTGACCAGCAGCCATGCATTGAGCCTCCACCTTCCTCTATCATGTATCAGAACGAGATGCTGGAGGAGGGGCACGAGTATGCTGTGATGCTGTACACATGGAGAAGCTGCTCCAGAGCTATACCTCAGGTCAAGTGCAATGAACAGCCAAATCGGGTGGAGATCTATGAGAAGACCGTGGAGGTGCTTGAGCCGGAAGTCACTAAACTCATGAAGTTCATGTACTTTCAACGCAAAGCGATCGAGCGGTTCTGCAGCGAGGTGAAGCGTCTGTGTCACGCAGAGAGGAGGAAGGACTTTGTGTCTGAGGCTTATCTCCTGACCCTGGGAAAGTTCATTAACATGTTTGCTGTTCTCGATGAACTGAAGAACATGAAGTGCAGTGTGAAAAATGACCACTCTGCTTATAAGAGAGCTGCACAGTTCCTGAGAAAGATGGCTGACCCTCAATCTATTCAGGAGTCCCAAAATCTCTCCATGTTTCTTGCCAACCATAATAGAATAACACAGTGTCTTCACCAGCAGCTTGAAGTCATTAATGGTTATGAGGAACTTCTGGCGGATATTGTCAATATCTGCGTGGACTACTATGAAAACAAGATGTATTTGACACCCAGTGAAAAACACATGCTTTTGAAGGTGATGGGCTTTGGTCTGTACTTGATGGATGGCAATGTCAGTAATATTTATAAACTGGACGCAAAAAAGAGGATAAATCTTGGGAAAATTGACAAGTTTTTCAAGTTACAGGTAGTCCCCTTGTTTGGTGACATGCAGATAGAGCTGTCTCGATACATTGAGACTAGCGCCCATTATGAGGAGAACAAATCCAAATGGACCTGCACTCAGAGCAGCATCAGCCCTCAGTACAACCTCTGTGAGCAGATGGTCCAAATAAGGGAAGATCATATCCGCTTCATCTCTGAATTGGCACGCTACAGCAACAGTGAGGTGGTGACAGGGTCTGGCCTGGATAGCCAGAAATCGGACGAAGAATACAGAGAGCTCTTTGACCTGGCACTTAGAGGCCTGCAGCTTCTGTCCAAGTGGAGCACCCACGTCATGGAAGTGTACTCTTGGAAACTGGTGCACCCCACTGACAAATTCTGCAATAAAGACTGTCCCGGCACTGCGGAGGAGTACGAGAGAGCCACCCGATACAACTACACCAGTGAGGAGAAGTTTGCTCTAGTCGAGGCTATTAGAAAGACAATCTGTGACTGGGAAGGAGCCCGAGAGCCCCCCAATGACCCCTGTCTGAGGGGAGAGAAGGACCCCAAAGGAGGCTTTGATATTAAAGTCCCCCGTCGTGCActTTACATGGTGAGAACCATGTTAGAGTCACTTATCGCTGACAAGAGCGGCTCTAAAAAAACTTTGCGAAGCAGCCTGGACGGGCCCATCGTCCTGGCCATCGAAGATTTCCACAAGCAGTCCTTTTTCTTTACTCATCTTCTTAACTTCAGTGAAGCTCTCCAGCAATGCTGTGATTTATCCCAACTCTGGTTCCGAGAATTCTTCTTGGAGCTGACAATGGGCCGCAGAATTCAGTTCCCCATTGAGATGTCCATGCCCTGGATTCTAACGGATCACATTCTTGAGACCAAAGAGCCCTCTATGATGGAATATGTTCTTTACCCACTGGACCTTTACAATGACAGTGGATACTACGCTTTGACAAAATTTAAGAAGCAGTTCCTCTATGATGAAATTGAAGCTGAgGTGAATCTTTGTTTTGATCAGTTTGTCTACAAGTTGGCAGATCAAATATTTGCCTACTATAAAGCAATGGCTGGCAGTGTTCTGCTTGACAAGCGATTTAGAGCTGAGTGCAAAAACTATGGGGTGATCATTCCTTATCCACCTTCCAACCGCTATGAGACCTTGCTAAAGCAGAGACACGTACAGctTCTAGGTAGATCAATTGACCTGAACAGATTAATCACTCAGAGAATATCAGCTGCGATGTACAAATCTCTTGACCAGGCGATTAAGTGGTTAATGGAAATCAATCGGCTGACTCACCGGCTCCTGTCGAAGCATATGACCCTGGATAGCTTTGATGCCATGTTCAGAGAGGCCAACCACAACGTCTCGGCTCCCTATGGGCGAATCACTCTCCACGTCTTCTGGGAGCTGAATTTCGACTTTCTCCCCAACTACTGCTACAACGGCTCTACCAACAGATTTGTACGGACAGCAATTCCTTTCACCCAAGAGCCACAAAGAGACAAACCTGCTAATGTCCAGCCTTACTATCTATACGGGTCAAAGCCCTTGAACATTGCATACTCCCACATCTACAGTTCTTACCGCAACTTTGTGGGACCTCCGCACTTTAAGACTATCTGTCGCCTGCTCGGATACCAGGGGATTGCTGTGGTGATGGAGGAGCTCCTGAAGATTGTCAAGAGCCTGCTCCAAGGCACCATCCTACAGTATGTGAAAACCCTGATAGAAGTGATGCCCAAGATCTGTCGCCTGCCCAGACATGAGTACGGCTCTCCAGGTATTTTGGAGTTTTTCCACCATCAGCTGAAAGACATAATTGAATACGCAGAGCTGAAGACGGATGTATTTCAGAGTCTTCGAGAAGTGGGGAATGCAATCCTGTTTTGCCTGCTGATAGAGCAAGCTTTGGAAGAAGTGTGTGATTTACTTCATGCCGCACCATTTCAAAATATCCTTCCTAGAGTTTACATCAAAgAGGGAGAGCGTCTAGAAGTCCGAATGAAAAGACTTGAGGCAAAGTACGCACCACTTCATTTGGTTCCTTTGATTGAGAGGCTGGGGACCCCTCAGCAAATCGCGATCGCGAGAGAGGGAGACCTTTTGACGAAGGAGCGGCTGTGTTGTGGCCTGTCCATGTTCGAGGTGATCCTGACCCGCATCCGAAGCTATCTGCAGGATGCAGTGTGGCGGGGACCCCCTCCCACCAATGGGGTCATGCATGTGGATGAGTGTGTTGAATTTCATCGTCTCTGGAGTGCCATGCAGTTTGTCTACTGCATCCCTGTGGGGACCAATGAGTTCACAGCAGAGCAGTGCTTTGGTGATGGGCTGAACTGGGCCGGCTGTTCTATCATCGTCCTACTAGGCCAGCAGCGACGCTTTGATCTGTTTGACTTCTGCTACCACCTCCTCAAAGTCCAGAGGCAAGACGGAAAGGATGAAATAATCAAAAATGTGCCCTTGAAGAAAATGGCTGACCGCATCAGAAAATACCAGATATTAAACAATGAGATCTTTGCCATCTTAAACAAGTACATGAAGGCTGTAGAGACGGACAGTTCAACAGTAGAACACGTGCGCTGTTTCCAGCCGCCTATACACCAGTCCCTGGCCACCACCTGTTGAAGAAAGCCCCCCTGCAAGCCTTTAACATAGCAAACTCTTCACCTGGTTTTTGGCAAATTGGTATTCGAGATTTACGTATCCCGTAAATACAGTTGCGACCTTTTGCCTTGAATGCTAGGCTGATATTTTCATCCAATCATCGCATGCTCTCATTTTGAATTTGCAGTTTAATGGTGCAGGGAAAGAACTGCGACTGCTGATCTTCAGTCATTGCAAGCAATTTTCAGTGGTCATTACCTACAAAGggtaaatacaatattattctCAGCCCCTTAAGCCTTCAATTAGTTACTTACTTCCTCCTTTGTAGACTGCAGAAGTATTATACCTCAATCCTTGTGTGTTACAGTCAGCATCATGTTCACAGGCAATTTcagcagaacattttaaaggtttCCCTTTAACAGAAATGTGGTTCTTCACAAGAAATATTGCTTTAAATCAGTATGTCTTCAGTGGCCTTATTGTCACTGAACTAAATCAACTTTTAAATACAACGACAGCCATTTTAAACAGGCAActtaatacatgttttctgtgACATTAATTTCTTCCAACCTGTTGAATAACAGatttaccaaaataaacataaaaattgaattgaccCTATTGAAGAGCAGCAGAGACCAAGAATATTTAGGGACATTAAAGGGTGGAAATGTTTTACTTGACAATATAATATCATTAAGGTGCATCCACAGTTTGACCTTGAtgtttgcttttatatattacactttATTAAGGTTCTGCTAGCATTGGAAACAGTCTTTCAGAACCCTGAACATTTAGCTGGAGGGAAATGTGTCAATGGGTCAGTACTAATGTCAGaattgaaattaagaaaaaagactaccccccccccatcactcAAAGGTTTTTTGTCTCTTTAATCTTTTcaagaatgagaaaataaattatttttaatcaattcatGTATATTATTGTGGTTTAAAGAACAacttaatgtaaatattgaatttgttagaataatacatttagtttcACTTATTGGTCTGCATGCCTCCCTCTGATTTAAGTTCTTCACAAGTGTAACAAGACAGCTGCCTTTTCTTTACAAAGTAATTCTACACATTATTGACAACCGTTAActtccagtttattttattcttgaaTAATAGATTTCTTCGGGGGCTCCGAAAGCTGTACCAGGCTTATTTTCTTGGTTATTTTATATCTAGCCCCACACCTTTTAGGCCCAGTAGTTTAATGCTCAACTAAATCTGCCTCTTAGTAACCATAACACACCCTGTGAAGAAGATATACACTGAAACTGAAAGGCCCTCTAGCTGTATTTCTAACCAGTTAGAGGAGTCAAGGAAAGCAGTCAATGTCAATGCAATTATCACTGAGATTCTGTGATAACCACTGTCTGTACTTCCTTTCTGTCTGAGGTATGGAACCAATGATTTCTACCtgctaaaactaaatctaacaTTTGTATTCTGAATTTGGAATTAGGTTTTCTTTCCTAACAAGGTGGTTTTAATAAATCTGCTCAAAAGACAGCTCAGTAAATGAGAGTAGTATGAGTTTCAGATATGTTTGGTGTAATTCTCCATTTGAGGAGCACTACTTCTGCTGGGAgttacatcaaaataaaacctgttccATTCACCCTGTTgtaaagaagaaacaaaagaaccAGTGATCACCTAGAAATGTTTTCTCACTTTAAGCACTGATAAATATGCAGCACGTTAACTCAGAAAGAGGTGATGTTTTGTGGAAATGGTTGGCCATCCTGCCCACCCCCTTTTCAAATATAGGTTactgtatttagaaataaaaaactcTACCCTAATCAATGGAtgctttaattaatataacatcCCTATGTTTAAGTGTTTCAGTATGTGCtaccttttacatttaaaaataaatgcataactaATCGGGAAAACCATTCAGAAATACACTTTATAtacacaattttacattttactacagtatttagtttttttgtcatttcttaCCAGTGTTTAGTAGAGAGTGTGAATGCCCCTTTCAGCTTTGGTGTGTTTTTCACTGGTATTTGAGAAAGTGAAGTCTTGTAAGCTTTTTtgctaaaataacaacaacaaaaaacaaaggtgCATTCCATTTATGCAAATATCTAATATTTGCAGTTTCACTGACATCTCTTTTTTTTACAACTATCAgattataacattgtataaaataaaataaaaaaagcaatttagaTGTGAAAGGATTTGCATTATAAATGTGTGCTCAAACTGTAAAAATACTGAACAAAGTACATACCTCttacttatacaatgttatgaTACCAAACCCTGGTCTTAATCATGTTAAAAGAATGACCACATGAGCTCTGAAGGCAGTGACAAAGATCATATAATCTGTTCATTCCTGTTTATGGTATTTGTGGAAAAAAAGGGTCAgattgttttgcattcattttgtgaCCTTCTGCAGGGCACAATTTCATATATTGATTCCTCTTAATTTAGAGAAGCAATTCTCTGAAAAAGGATAAGACAGTATTAATGGGTATTGACTTTTTACTTTAGCAGTGTTACCAGAATatctattttttcattttatgtttaaaagaaagcaattccattttttattaatagttAAACACACTTGTGAAAAATGCACGGCAGCTTTTGTTGTAAAGTTTTATTCGTTGTTGAATGCGTTTCTCcgctctttttctcttttttgttgttgtttgtttgtttcggtttttttaaagtattaactGGTTTTacaatgattgttttttaaaaagtagcTGTTTTCTTGacctgtatttattaatacatgaatCCACTGTATTGTTCCATAAAGGATGaacatgttaatttaaaacatgtaattttaaaagttaGCATGGCAGGTGTAATTTATTGTTAACATGGCTCTATTTGTGACATAAAGTTTTGTTCATGATATTGTTGTTCAAGTGATCAtgtcctgaaaaaaaaacaaataaacaaaaaaggtcctaTGAAAGCTAAAGTGAAAGTATGTTGTATTTCCATGAAATAAAACCTAACTTAAAGACGTC

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0010842 retina layer formation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05749 CYFIP; cytoplasmic FMR1 interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132340 lncRNA upstream 187021 18032755 ~ 18033025 (+) True G105794
TU132337 lncRNA upstream 219703 17999636 ~ 18000343 (+) True G105792
TU132318 lncRNA upstream 451825 17765891 ~ 17768221 (+) True G105776
TU132310 lncRNA upstream 468562 17751250 ~ 17751484 (+) True G105769
TU132287 lncRNA upstream 477659 17734990 ~ 17742387 (+) True G105756
TU132421 lncRNA downstream 372705 18616850 ~ 18617065 (+) True G105858
TU132641 lncRNA downstream 1344048 19588193 ~ 19588973 (+) True G106022
TU132698 lncRNA downstream 1559026 19803171 ~ 19803475 (+) True G106071
TU132775 lncRNA downstream 1712860 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 1734102 19978247 ~ 20014348 (+) True G106138
AMCG00011323 mRNA upstream 8183 18200641 ~ 18211863 (+) True AMCG00011323
AMCG00011320 mRNA upstream 121973 18092116 ~ 18098073 (+) True AMCG00011320
AMCG00011324 mRNA upstream 144009 18070401 ~ 18076037 (+) True AMCG00011324
AMCG00011305 mRNA upstream 458263 17757826 ~ 17761783 (+) True AMCG00011305
AMCG00011306 mRNA upstream 464288 17752774 ~ 17755758 (+) True AMCG00011306
AMCG00011322 mRNA downstream 1424 18245569 ~ 18252371 (+) True AMCG00011322
AMCG00011319 mRNA downstream 15655 18259800 ~ 18268657 (+) True AMCG00011319
AMCG00011325 mRNA downstream 558493 18802638 ~ 18822410 (+) True AMCG00011325
AMCG00011326 mRNA downstream 703207 18947352 ~ 18999884 (+) True AMCG00011326
AMCG00011327 mRNA downstream 773077 19017222 ~ 19042201 (+) True AMCG00011327
TU132321 other upstream 431996 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 1237805 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 2235967 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 2364262 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 2367657 15850646 ~ 15852389 (+) True AMCG00011253
TU132460 other downstream 868765 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 977910 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 1851084 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 1867935 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 1874430 20118575 ~ 20162966 (+) False G106139

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015672 True 3762 mRNA 0.51 29 NC_007125.7 33984831 ~ 34026316 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_12242613_12255688.mRNA True 4349 mRNA 0.45 24 CI01000000 12242350 ~ 12256588 (-)