RNA id: TCONS_00015672


Basic Information

Item Value
RNA id TCONS_00015672
length 3762
RNA type mRNA
GC content 0.51
exon number 29
gene id XLOC_008014
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33982007 ~ 34044452 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACAACCCACGTGACCCTGGAGGATGCGCTGTCCAATGTGGACCTGCTGGAGGAGCTTCCTCTCCCAGACCAGCAGCCATGCATCGAGCCCCCTCCATCCTCCATCATGTACCAGGCAAACTTTGACACCAACTTCGAGGACAGAAATGCGTTTGTCACCGGCATTGCCCGCTACATTGAACAGGCCACTGTGCACTCCAGCATGAATGAAATGCTGGAGGAGGGACATGAGTATGCCGTCATGTTGTACACCTGGAGGAGCTGCTCTAGGGCCATTcctcagGTGAAGTGCAACGAGCAGCCAAACCGAGTGGAGATCTATGAGAAAACGGTGGAGGTGCTGGAGCCTGAGGTCACCAAGCTTATGAAATTTATGTACTTCCagCGCAAGGCCATTGAGCGTTTTTGCAGCGAGGTAAAGCGACTGTGTCACGCTGAACGCAGGAAGGACTTTGTTTCCGAGGCCTATCTGCTCACTTTAGGAAAGTTCATCAATATGTTTGCTGTGCTGGACGAACTGAAGAACATGAAGTGCAGTGTAAAAAATGACCACTCTGCTTACAAGAGAGCGGCTCAGTTCTTGAGGAAAATGGCTGACCCTCAGTCCATCCAAGAGTCCCAAAACCTCTCTATgtttttagccaatcacaacagaatTACACAGTGTCTGCACCAGCAGCTGGAGGTGATCCCAGGTTATGAGGAGCTGCTGGCTGATATTGTCAACATCTGTGTGGATTACTACGAGAACAAGATGTACTTGACCCCCAGTGAGAAACACATGCTGCTAAAGGTCATGGGTTTTGGCCTGTACTTGATGGATGGAAATGTCAGCAACATCTATAAGCTGGATGCCAAGAAAAGGATAAACCTCAGCAAAATCGACAAGTTCTTCAAGCTTCAGGTGGTGCCACTGTTTGGTGACATGCAGATTGAACTGTCACGGTACATAGAAACAAGTGCCCACTATGAAGAGAACAAATCCAAgtGGACCTGCACTCAGAGCAGCATCAGTCCGCAGTATAACCTGTGTGAGCAGATGGTGCAGATCAGAGAAGACCACATCCGCTTCATCTCTGAGCTCGCGCGCTACAGTAACAGTGAGGTGGTGACCGGCTCTGGTCTGGACAGTCAGAAGTCTGATGAGGAATACAGAGAGCTGTTTGACCTGGCGCTCAGAGGACTGCAGCTTCTGTCCAAGTGGAGCACCCATGTCATGGAAGTGTACTCTTGGAAACTGGTCCACCCTACGGATAAGTTCTGTAATAAGGACTGCCCAGGCACAGCTGAGGAGTATGAGCGTGCTACACGCTACAACTACACCAGCGAGGAGAAGTTTGCCCTGGTGGAGGTCATTGCTATGATCAAGGGTCTTCAGGTTCTGATGGGCCGGATGGAGAGCGTCTTCAACCAGGCCATCAGGCACACCATCTACTCTGCCCTGCAGGACTTTGCACAGGTGACCCTGAGAGAGCCACTCAGACAGGCCGTACGCAAGAAGAAGAACGTCCTCATTAGTGTCCTTCAGGCTATTCGTAAAACCATCTGTGATTGGGAAGGCGCAAGAGAACCCCCTAATGACCCTTGTCTGAGGGGAGAGAAGGACCCCAAAGGAGGATTTGATATTAAAGTTCCTCGTCGTGCTGTTGGGCCCTCGAGCACACAGCTTTACATGGTGCGCACCATGCTGGAGTCTCTCATCGCTGATAAAAGTGGCTCTAAGAAGACTCTCCGGAGCAGTCTGGATGGTCCCATCGTTCAGGCAATAGAGGACTTCCACAAGCAGTCTTTCTTCTTCACCCACCTCCTGAACTTTAGTGAAGCCCTGCAGCAGTGCTGTGATCTGTCCCAGCTCTGGTTCCGAGAGTTTTTCCTGGAGCTTACCATGGGCCGCCGCATCCAGTTCCCCATCGAGATGTCCATGCCCTGGATCCTTACCGATCACATTCTGGAGACCAAAGAGCCCTCCATGATGGAGTACGTGTTATATCCATTAGATCTTTACAATGACAGTGGTTATTATGCCCTCACAAAATTCAAGAAGCAGTTCCTCTACGATGAGATAGAGGCCGAGGTCAACCTGTGTTTTGATCAGTTTGTGTACAAGTTAGCTGACCAGATATTTGCCTACTACAAAGCAATGGCTGGaagTGTCCTCCTAGACAAACGCTTCCGTGCAGAGTGTAAGAATTACGGTGTGATCATCCCATACCCGCCATCAAACCGCTACGAGACGCTGCTGAAACAGAGACATGTGCAGCTGCTGGGTCGCTCCATTGACCTGAACAGATTGATAACCCAGAGGATCTCAGCAGCCATGTACAAATCTCTGGATCAAGCCATCAGCCGTTTTGAGAGCGAGGACCTTACCTCCATAGTGGAACTTGAATGGCTATTGGAAATTAACAGGTTGACTCACCGTCTGCTCTCTAAGCATATGACGCTGGACAGTTTTGACGCCATGTTTCGTGAAGCCAACCACAACGTCTCTGCTCCATATGGACGCATTACGCTGCACGTCTTCTGGGAACTCAACTTTGACTTCTTACCAAACTACTGTTACAATGGCTCCACCAACAGGTTTGTGCGAACAGCCATTCCCTTCACCCAAGAGCCTCAGAGGGACAAGCCTGCCAATGTTCAGCCATATTACTTGTATGGCTCAAAGCCTCTGAACATTGCCTACTCCCACATCTACAGTTCCTACAGGAACTTTGTGGGACCTCCGCACTTCAAAACAATTTGCCGGCTTCTCGGTTACCAAGGCATCGCTGTGGTGATGGAGGAGCTGCTCAAGATTGTCAAGAGCTtgttgcAAGGCACCATCCTTCAGTATGTGAAGACCCTCATAGAGGTGATGCCCAAGATCTGCCGTCTCCCTCGTCATGAGTACGGCTCACCAGGCATCCTGGAGTTCTTCCACCATCAGCTGAAGGACATCATTGAGTACGCTGAGCTCAAGACCGATGTGTTTCAGAGTCTGAGGGAGGTGGGCAATGCTGTTCTCTTCTGTTTGCTCATCGAACAAGCTCTGGTGTCTCAGGAAGAAGTTTGTGACTTGCTTCATGCAGCCCCATTCCAGAACATCCTCCCCAGAGTCTATATCAAAGAGGGAGAGCGACTGGAGGTGAGGATGAAGAGGCTGGAGGCAAAGTATGCTCCTCTTCATCTCGTGCCCCTCATTGAGAGACTCGGGACTCCACAGCAAATTGCAATTGCACGTGAGGGTGACCTGCTGACGAAGGAGCGGCTGTGCTGTGGCCTGTCCATGTTTGAAGTGATCCTGACGCGCATCCGCAGCTTCCTGCAGGACAACGTGTGGCGAGGTCCTCCTCCCACCAACGGCGTCATGCATGTGGATGAGTGCATGGAGTTCCACCGCCTCTGGAGCGCCATGCAGTTTGTTTACTGCATTCCTGTGGGCACACACGAGTTCACTGCAGAgcaGTGTTTCGGTGATGGGCTGAACTGGGCTGGATGTGCCATTATTGTGCTGTTAGGACAACAACGCCGCTTTGACCTCTTTGATTTCTGCTACCATTTGCTCAAAGTTCAGAGGCAGGACGGCAAAGACGAAATCATTAAGAATGTGCCCCTGAAAAAGATGGCAGACCGCATCCGGAAGTATCAGATTCTCAACAATGAGATCTTTGCCATCCTCAACAAGTACATGAAGGCGGTGGAGACGGACAGTTCAACAGTGGAGCACGTTCGCTGTTTCCAGCCTCCTATACATCAGTCTCTGGCCACCACATGTTAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0000902 cell morphogenesis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0097202 activation of cysteine-type endopeptidase activity biological_process
GO:0010842 retina layer formation biological_process
GO:0001964 startle response biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080724-2 Acts upstream of or within retina layer formation; retinal ganglion cell axon guidance; and startle response. Predicted to be located in cytoplasm. Is expressed in central nervous system and retina. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 65. Orthologous to human CYFIP2 (cytoplasmic FMR1 interacting protein 2).

Ensembl:

ensembl_id ENSDART00000186062

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015662 lncRNA downstream 86242 33875058 ~ 33898589 (-) True XLOC_008009
TCONS_00015661 lncRNA downstream 112739 33868571 ~ 33872092 (-) True XLOC_008008
TCONS_00016425 lncRNA downstream 206579 33666082 ~ 33778252 (-) True XLOC_008004
TCONS_00016426 lncRNA downstream 240078 33722042 ~ 33744753 (-) True XLOC_008005
TCONS_00016424 lncRNA downstream 517140 33464948 ~ 33467691 (-) True XLOC_007999
TCONS_00016061 lncRNA upstream 317766 34344082 ~ 34490887 (-) False XLOC_008017
TCONS_00016427 lncRNA upstream 436370 34462686 ~ 34489461 (-) True XLOC_008017
TCONS_00015678 lncRNA upstream 485920 34512236 ~ 34512878 (-) True XLOC_008018
TCONS_00016062 lncRNA upstream 503568 34529884 ~ 34532598 (-) False XLOC_008019
TCONS_00015679 lncRNA upstream 503568 34529884 ~ 34535102 (-) True XLOC_008019
TCONS_00015668 mRNA downstream 3287 33973921 ~ 33981544 (-) True XLOC_008013
TCONS_00015667 mRNA downstream 6714 33973146 ~ 33978117 (-) False XLOC_008013
TCONS_00015665 mRNA downstream 39032 33939213 ~ 33945799 (-) False XLOC_008012
TCONS_00015666 mRNA downstream 39139 33940719 ~ 33945692 (-) True XLOC_008012
TCONS_00015664 mRNA downstream 48307 33898976 ~ 33936524 (-) True XLOC_008011
TCONS_00015673 mRNA upstream 18968 34045284 ~ 34059681 (-) False XLOC_008015
TCONS_00015674 mRNA upstream 33131 34059447 ~ 34074510 (-) True XLOC_008015
TCONS_00015675 mRNA upstream 99539 34125855 ~ 34276574 (-) True XLOC_008016
TCONS_00015676 mRNA upstream 484384 34510700 ~ 34512859 (-) False XLOC_008018
TCONS_00015677 mRNA upstream 485695 34512011 ~ 34513103 (-) False XLOC_008018
TCONS_00015641 other downstream 506844 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other downstream 507099 33475820 ~ 33477732 (-) False XLOC_008000
TCONS_00015628 other downstream 639858 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015626 other downstream 651250 33333448 ~ 33333581 (-) True XLOC_007990
TCONS_00015612 other downstream 753067 33220856 ~ 33231764 (-) True XLOC_007986
TCONS_00015693 other upstream 1366431 35392747 ~ 35405723 (-) True XLOC_008028
TCONS_00015701 other upstream 1545229 35571545 ~ 35853647 (-) True XLOC_008033
TCONS_00015719 other upstream 2403927 36430243 ~ 36437239 (-) True XLOC_008042
TCONS_00015732 other upstream 4737350 38763666 ~ 38774885 (-) False XLOC_008051
TCONS_00015734 other upstream 4744314 38770630 ~ 38782985 (-) True XLOC_008051

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00011321 True 6484 mRNA 0.41 29 CM030133.1 18220046 ~ 18244145 (+)