RNA id: TCONS_00015665


Basic Information

Item Value
RNA id TCONS_00015665
length 3503
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_008012
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33939213 ~ 33945799 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttataagtttgtttgtttgacaaaaccttatgtgatttaaaaaaaaagactgaagTAAATTTGGCAGATTTTTGTACAAGCGTGGAACTCTTTTAGAGGGGCGTTGCGGCAGACGGAATGTTTCAGCTGCGACACAGACCTGTCATGTGCCGAATGTTGTTAGCCAGAAGCAGCAGCAGTTCATTGTGAAAGATTTGCTCTGTATTTACTGTCGGGACAATATACTGAATGGAATGACAGGTCGGAATCACTTACTTACAATATATTACggatatttttttagttttcaacTGGTTGTTTCTGTCAGCGACAACTACTTGAACCTTCGATGTTGTATTAGCAATTGTTAATTCATTGCAACTTTCTGTTTATCATGCCTTCAGGAAATAAAATGTGTCGTTTAATGATTTTAACGTCTCCCCCAATTGTCTCTCTTTCCTTTTTGTGTTTAGATTCGAGCAAACGTGGACCGAGTGGCTTTTTACAGGTTGAAAACAGGTTGAGCAGGTTGTGTGTCAAGAAGCGTTTGGTTTGATAAAAGGCTGAAAACATGACCAGCTTTATGAGCAGAGTCTGGTGTAAGGTGGAGTCGACCGGTCGTCAGCTGCCGATCGTCCTGAACGCCGTGTTGGTGTTCTCCATCACCGCAGAGGTCAGTTATCTGGTGCTGGTCGAGGCTCCTTTTGAACCGGAGCAGAAGAAGACCGACTGGTCCACTATTTGGACTGGCCTGCATCTATTCGCCCAGTACTTCAtgctgggaaacataacctggAACGCCTCGCTGTTCGTGAAAACCAACCCCAGTATTCGCGGAGTGTTTCTTGGAGGAGATACTTTGGGTCAAGGTTGGAGGTACTGTTACAACTGTGAGACACACACTCCTCCACGATGCTCGCACTGCTATGACTGTAACGTGTGTGTACTGCGGCGCGATCACCACTGTGTGTTTTTTGGCCAGTGCGTCGGCTTTCACAATTACCGGTATTTCCTGACCTGTCTGCTCTTCATGTGGGCAGGGCTGCTCTATGCAGTTGTCATGAACGCTGAAGTCTTCATTTTCATCCTAAAGGAGGGCGTGACGTTTCACAGTGTCATGCTTTTACTCGTGCCCTGGATAATGCTCGTCTCTGGACAGGTGACTACACGAGCCTTTGCTTTTGCATTTATTGCTGACACTTGTGTCGTGGGTTTCCTGCTGGTCGCTGCCTTCCTCTTTTTCCACGTGGCTCTGATGCTGAGAGGACAGACCACCCGCGAGTGGTACTCCACCCGACGGCCGTACAGCCTGGGAACCATGGCCAACATCAGGGAATGCCTTGGCAAGAACTGGTACTTCTGCTGGCTCTGTCCGTTGATACCTTCCCCACTGCCTGGAGACGGCATAAACTTCAAGGTGACCGCTTCTCTTGAGCCTAAAAAGCAGGCCGTGCACTGATACTGTAGCCGTTTTCTCAATGCAATTTCAATACACTGATGCAGAATGGCATGCTGTTGAGCCTGAAGCAGCGACTGCATGCTGCGCTCACTCCAAAACTTACCAACCCTCTTTTTATCCGAAGAACCAGCAGGACATGAAGATTTCTGATTTCACCTAACAAATGCCTTTCCTCATTGCAGCATCCTTGATGATAAATTGTTGATAATTTGGTGGATgagaaatatataattttaaatattttattgttttattttgtatatttagttgttgttttttttctgtgccgTCTGTGCTTTTGTAAAGCAAGCAATTTTGGAATgggaaaaatcactttttttttttttttttattgatgtgcCAAAAATGGGTTTAATCTAATGTTTAAGTGGTGTATGCCAAGCCGTCATGTTTTTtccttgttttaattaaacaagaaGTGTCTTTTTGTTTAATATTGCACTGAATATTGTTTACCATTGGTCTGATGTttatatttgctataaatgccCGATTATTCttctgtctttaaaataaatgccttttggttttatatatttatttgttttgatatttatttttagatgagcCTTTAAGGAGAATACCttattcactcaaaaaaattaatttgatatTAATTTACTCACTGTCAGGCTATCCAAGATTTAAATCCATTAATTTTTCCTTcagttaattatatttttatcctAAAGCTTTGATGTTTGGCAGTGACTACCAGCACTTTAAGAGCGGGAGTCTAAGAAACAAGTGCCTTTGCAAAAAAACAATGCTATTTAAAGTATTATCGCATTTAACCCTCTGCTTCAGAAAGCTGCCCTGAATTAATTCACAATGGTGTGAAGTGAACAATCCATGCAATATAACAACAAGTGGAATACAaactgatattattatttttaagtaaaaactaATGGTAACacttaagttaaagtaacaaGTCCCACTATTAACTACTGAGGTATtgcctgcttattattaagatatgggCTTTTTTATCAACGCGTGTAAAGTGTAATATTATTCTACATTCCTTATTCTAACCAATGATTAAGCCCAACTACTAACttgctaactattaataagctcCAAATTAGTACTTAAattaagctaaaagtcttagttaaagGTTTGTTAACAGCGAGATTttgtatcttaaaataaaaattttatttaaatgtatttattataatttatttcaatCATAATTTTATTCAGCAATAAGACGAATTTATTTCGAAAGATTTTTAGATTGTATCATCAGCGGGgcggcacagtaggtagtgctgttgcctcacagcaagaaggtcactggttcgagcctcggctgggtcagttggcgtttctgtttgaagtttgcatgttctccctgcattcgcgtgggtggtttaagtgactttgaacgtggcatggttgttggtgccagacgggctggtctgagtatttcagcaaCTGCTCATCTGCTggcattttcatgcacaaccttctctagggtttaaagagaattgtccgaaaaagagaaaatatccagtgagcagcagtactctgggggcaaatgccttgttgatgccagagatcagaggagaatggccagagtggttccagctgatagaaaggcaacagtaacttaaattaccactcattacaaccgaggtattaCGCACAGCACATCGAAGCATGAGGCGGATGGGCTGCAGCAGGaggccacaccgggtgccactcctgtctgctaagaacaggaaactgaggctacagttcacacagactcaccaaaattggacgattagaaaaatgttgcctgatctgatgagtctcgatttctgttgtaacattcgaatggtagtgtcagaattttcttggcacactttgggcccattagtaccaattgagcattgtgccaatgccacagcctacctgggtaCTGCTGCTGAttgtgtccatccctttatgattacagactggtttcttgagttcactgtactcaaatagtcCCCACAGTCAAGGCCAGATTAAGAACACATCGGGCCTGAGGCTATAGTAaatcc

Function

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-8 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC24 (zinc finger DHHC-type containing 24).

Ensembl:

ensembl_id ENSDART00000189778

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015662 lncRNA downstream 40624 33875058 ~ 33898589 (-) True XLOC_008009
TCONS_00015661 lncRNA downstream 67121 33868571 ~ 33872092 (-) True XLOC_008008
TCONS_00016425 lncRNA downstream 160961 33666082 ~ 33778252 (-) True XLOC_008004
TCONS_00016426 lncRNA downstream 194460 33722042 ~ 33744753 (-) True XLOC_008005
TCONS_00016424 lncRNA downstream 471522 33464948 ~ 33467691 (-) True XLOC_007999
TCONS_00016061 lncRNA upstream 398283 34344082 ~ 34490887 (-) False XLOC_008017
TCONS_00016427 lncRNA upstream 516887 34462686 ~ 34489461 (-) True XLOC_008017
TCONS_00015678 lncRNA upstream 566437 34512236 ~ 34512878 (-) True XLOC_008018
TCONS_00016062 lncRNA upstream 584085 34529884 ~ 34532598 (-) False XLOC_008019
TCONS_00015679 lncRNA upstream 584085 34529884 ~ 34535102 (-) True XLOC_008019
TCONS_00015664 mRNA downstream 2689 33898976 ~ 33936524 (-) True XLOC_008011
TCONS_00015663 mRNA downstream 44298 33892300 ~ 33894915 (-) True XLOC_008010
TCONS_00015659 mRNA downstream 66597 33859695 ~ 33872616 (-) False XLOC_008008
TCONS_00015660 mRNA downstream 67121 33860089 ~ 33872092 (-) False XLOC_008008
TCONS_00015657 mRNA downstream 80064 33825482 ~ 33859149 (-) False XLOC_008007
TCONS_00015667 mRNA upstream 27347 33973146 ~ 33978117 (-) False XLOC_008013
TCONS_00015668 mRNA upstream 28122 33973921 ~ 33981544 (-) True XLOC_008013
TCONS_00015669 mRNA upstream 36208 33982007 ~ 34044452 (-) False XLOC_008014
TCONS_00015670 mRNA upstream 37550 33983349 ~ 34044369 (-) False XLOC_008014
TCONS_00015671 mRNA upstream 38899 33984698 ~ 34044369 (-) False XLOC_008014
TCONS_00015641 other downstream 461226 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other downstream 461481 33475820 ~ 33477732 (-) False XLOC_008000
TCONS_00015628 other downstream 594240 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015626 other downstream 605632 33333448 ~ 33333581 (-) True XLOC_007990
TCONS_00015612 other downstream 707449 33220856 ~ 33231764 (-) True XLOC_007986
TCONS_00015693 other upstream 1446948 35392747 ~ 35405723 (-) True XLOC_008028
TCONS_00015701 other upstream 1625746 35571545 ~ 35853647 (-) True XLOC_008033
TCONS_00015719 other upstream 2484444 36430243 ~ 36437239 (-) True XLOC_008042
TCONS_00015732 other upstream 4817867 38763666 ~ 38774885 (-) False XLOC_008051
TCONS_00015734 other upstream 4824831 38770630 ~ 38782985 (-) True XLOC_008051

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_12214894_12216826.mRNA True 2232 mRNA 0.42 3 CI01000000 12213831 ~ 12217119 (-)