RNA id: TCONS_00015664


Basic Information

Item Value
RNA id TCONS_00015664
length 4997
RNA type mRNA
GC content 0.41
exon number 17
gene id XLOC_008011
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33898976 ~ 33936524 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCTAGTCCGCCGTATGTTGATAAGAAAGGCCACTGTATGCGGTGTGAATGAAAGAAGAGGGCTTCTCTCTCGGATGGAGGTGTTTTAAGAGGTGTGGTGGAGGGATGAAGGCGGTGTTGACATCCAGACGGCAGCGGCTCTTCTATCGGCTCTTCATATGTGCTGTGGGGCTCATCGCCGTCACCTGCTTCGCTCAGATTCTCCATGTAACAGAACATTCCAAAGAAGAATCGGACCAGAACTGGGCTCGGCGTAAACTAACCCAGCAGATAATAGAGGAGAACCAGACATCCAGTACACCCAGAGCTGCTATCCATGAATTTCCACAGGACATCTTCACTAAGGGACAGAGGAGGCATGGGGCCATTCTACTGCATGTGTTTTGTGCGGTTTATATGTTCTACGCCCTTGCTATTGTCTGCGATGTCTTCTTTGTCCCCTCTCTGGAAAAAATCTGTGAGAATCTGCACCTCAGTGAAGATGTTGCCGGTGCCACCTTTATGGCAGCGGGAAGCTCCGCCCCTGAGCTTTTCACATCGTTGATTGGCGTCTTCATCACCAAGGGAGATCTGGGTGTAGGAACTATCGTGGGATCTGCTGTCTTCAACATCCTGGTCATCATCGGAGTTTGTGGGATATTTGCTGGACAGACCATCACTTTGACCTGGTGGCCGCTCTTCCGGGACTCTATTTTCTACATCCTCTCTGTGCTGGCATTGATTCTGATCATATATGATGAAAAAGTAATCTGGTGGGAGACTATAATCCTCATATCGATGTATGGAGTTTACATCCTTATCATGAAGTTTAACAGTCAGATTTGGGGCTGGGTGGAGCAGAGGTTTGGTATCCCGGGTCAGCCCTGTCTGGTCAGCAGTCTGCGCAGAGATGTGTCTGTAGGAGAGGCAAGCCCACACTGTGACACCTCCATGATCCTCCTGAAGAAAGGTCAGAATGCAGGTGGCCAAGACTCCCCGGTGGTGATGGTGGATGAGCTGATGAGTCTTCACCCTCACCAGTTCTCTTTCTCAGAGGCAAGCCTCCGTGTCATGATCACGCCTCACTTCTCTCCCCGCACTCGCCTCAGCATGGCCGGACGCATGCTCATCACTGAGAGGCAGAGGCTGATTAGAAACAGGAGTCCTGGAGACAGCAGTGGCAGTGGAGCAGGAGACACTCCGGGACAAGATGGTCCAGGCATGGAAGCGGTTCCTTGGGGTCTGGAGAACGGAGGGGCCCTCGAGAGTGAAACGCAACCCCTGGAGGAGCCCAGACGCAGGAGCCAAGGAGGAGAGTTAGAACGAGTAGCAGACATAGAGGACACACAGCCGAAAGATGACGAGGAGGACGAAGAAGAGGCAGATGAAGAACCCTTCAGGCCCTTTACTGTGCCAGAGGGGCGCTGGGAGCAAGCGAAATGGATGTTCTCATGGCCTTTAAGCTGCCTGCTGTACTACACTGTCCCGAACTGTGTTTTGCCCCGTTGGGAGCGCTGGTTCATGGTTACCTTTGTGGCCTCAACACTCTGGATTGCCGTGTTCTCCTACCTCATGGTGTGGATGGTCACCATTATCAGTTTTACACTGGACATTCCAGATGTTGTTATGGGTATTACATTTCTAGCAGCAGGCACCAGTGTCCCAGACTGCATGGCTAGTCTCATTGTGGCCCGTCAAGGTATGGGAGACATGGCGGTGTCCAACTCTATTGGCAGCAACATCTTTGACATTCTGCTGGGTCTTGGTTTTCCATGGGCTTTGCGCACCCTAGTGGTTGATTATGGCTCAACTGTCTCCATTAACAGTAAAGGACTGGTGTACTCAGTGATTCTTCTCCTTGCTTCTGTTTTCCTCACTGTACTGAGTGTGCACCTCAACCACTGGAGGCTGGACCGGAGGTTAGGCCTCGGGCTCATGTTTCTGTATGCCATCTTCCTGCTCTGCTCCATCTGCTTTGAGAAACTCTAAATCCCACTTTCCTTGGTTAGCTTAGCTGTAGGGTAGACTTAGACCTGGTTATTCATATTTTACCCCCAGTCACTGCCTTATTAGTAGCGGTTATTTCAACCATGGTTTGAAGCCGGAGTAGTGAACGTTACATAAAGAGAACTATTACTCTGCTCTGGTAGATTAAAGGAATAGaccacaaaaaaaggaaaatttttCTGATTATTTACTCACGCTAAGGGCATTTTAGATGTATGACAGCCAAGGAGATTTTTCTCCATCTAATGCATGAGTTGCAACATTCGACCAACTCTAACCTTCAATAATCTATATTTAGGCAGTCTAAAAATAATCCACAAAACCCTGACAAAAAAAGTGTCTTCTATGGAGAAACAGTTTGTAGTTTTCAGGAAAAAAGGacaaatgtacagttaaagtcagaattattagcccccctgtatatgtctgtttaacggaaggaagatttttttcaacacatttcttaatatagttttagtaactcatttctaacaactgatttattttaactttgccatgatgacaaggaataatattttaaaagattttttagacacaagtattcagtttaaagtgacacaaaaaatttaactaggttaactatgttaactaggcaagttatggtaattaggcaaatcattgtataacgatagtttgtcctgtagacaatcgaaaaaatatatattgcttagtagggctaataaaattgacctaaaatgttttatttttttaataacataacataaaatcaaagagcttagaataaccaagaggcgacactcagtAGAACGATCCTTTGCAACAGCagcacccagcaacagccccaGATTCCGCcgttttggagtgaaagcgatcggctgtccattggatcttattgctgttgcgatggcaagcagctgctttgttttttatttatttatttaataagtacattaaagctgagatacaacctgaaagacgacaatacaacacttactatcacaatcatcagcgcttttaatagtttattttacaggcTTATGATATGCTGtagttctattggagttttcattccaaattggccgccgcgccctctagcggctgtttcccaaattgcactggagtgttgcctcttggtaattctatgctctttgttgaaataaaacaaataagaatttctcctgaagaaaaacatgggaaatattgtgaaaaatgtcttgctcttgttaaacattatttgggaaatatttaaaaaaataaaaatcacaggagggataataattctgacttcaactgtacatcacgTTCAGTCTCATAAAAGAGCTTGTGAATTACTTTTAGGCAGCCTTCATTTGGATTTTGCACAGTCAAAAATTGTGTAAGTTAAGCCCAATACACTTGCACTAGGAATAGTAAAACATACTTTTTGAGTGGCCTGGggtaaaacattttcatttttgggtgcactattCCTACACACATCTTTCAGCCACTCACCTGTTGAACAGTTCTGACAAACTCAAGGAGACTGTACTACATACTGTACCTCTGAAACATTTGTACTTCAACTAAAAACAAAACTGGATTTCAATTACAAGATGTGATAAATTTATACAAGCGGAATTCAATGTTTACAGCACACAGGACACTTCCTCTAACCTCGCTTTTGCATATTTGTATTCCGAAGTCTTAAAATCACAATCAAGCATGttgcaaaggaaaaaaaattatactagaaaagtgttattattattattaacaaaagagtTGGATTAATGCTTATAACAGAGACACACTCGATTTATTGCATTACTTTGCCTTATTTATTTTGGACTTTAGGTCTGTGGATTCAAGGATTCTCCTGTTTCAGTATATTTAAGAACAGTCTGTTCATTTTTGTGTTGAAAGTATTCTGGTACACAGTTGTTGTAGTATTACCGATTAACCAAAAACATCCCCGTCTTTGgtaagtgtttacatacagtacCAAACATAAATGCTTTTTATAAAGTGCCACTTAGAGATGTCTGTTGCACATTTTGATATGTCATTGTTCAACAGTTACTTTTGTTCCCCACTGCAATGATCTATGACGATGAGAACATTACAATCACATAAATACAATGTGTGACCTTTATACACAGGCCTTCATAGTTTATTGGATATAAGTTTTACACTAGGGTGTGTATGAATGACATTGATTAACAGACCTAAATTGGTCTTTGCACCAAATATATAGAAGATCCAAttggaatattattattattatttattgcttacTGTCtatgtcagtgtttctcaaccatgtcctggaggaccaccagctccgCACATTtaccatgtctccttaaccaaacacacctgattctgatcatcagctcattatcAGAGACTGATCGACCTGTAATTGGTGTGAAAGTCAAAAGAGAcatgcaaaacatgcagtgttggtgggcctccatgaacgtggttgagaaaccctGGTCTGTGACATAAAATTATAATAGTTAATATAGGATATATTCATAATGAAAGGCTTACAATATTTTTAGCTAAAATGAGTTAAGTTTGATACAGCAGTGTTTTAATTGTTGTAATTTATCATTAAAGTTATTAGTGACGTTTAATTAAGCATGCTTATGTTTTAGTTTTGcttgtatatttaatttttagtatTAAAAGCTCCCTCATCGTTTGTCAAAAAATTTCTTGTTTGTGGTTTTGCAGTTCATATAAACTAATGgataaaaagtaaattattgcatttatttttggaaAAGTCCAGAAGATTTTCATCTTATCACTCATGCTAAAAGAAAAATTGTGTTAATTAAActgatgaataaaatgtttatttggctAAATAATATGGcctgactgaaaaaaaaagtttgttgaaCATTTTCCCaggtattttaattaattttagaagTCACATTGGATCAGCTCATTGTCTCACCATTTGTTAGAGTTCTGTCTATATTCTTAAAGATATTTGTATGTTGTTGAGTGCAATAAAACAAGGTCTGTG

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008273 calcium, potassium molecular_function
GO:0005262 calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-39 Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion transmembrane transport and cellular calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC24A3 (solute carrier family 24 member 3).

Ensembl:

ensembl_id ENSDART00000112438

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015662 lncRNA downstream 387 33875058 ~ 33898589 (-) True XLOC_008009
TCONS_00015661 lncRNA downstream 26884 33868571 ~ 33872092 (-) True XLOC_008008
TCONS_00016425 lncRNA downstream 120724 33666082 ~ 33778252 (-) True XLOC_008004
TCONS_00016426 lncRNA downstream 154223 33722042 ~ 33744753 (-) True XLOC_008005
TCONS_00016424 lncRNA downstream 431285 33464948 ~ 33467691 (-) True XLOC_007999
TCONS_00016061 lncRNA upstream 407558 34344082 ~ 34490887 (-) False XLOC_008017
TCONS_00016427 lncRNA upstream 526162 34462686 ~ 34489461 (-) True XLOC_008017
TCONS_00015678 lncRNA upstream 575712 34512236 ~ 34512878 (-) True XLOC_008018
TCONS_00016062 lncRNA upstream 593360 34529884 ~ 34532598 (-) False XLOC_008019
TCONS_00015679 lncRNA upstream 593360 34529884 ~ 34535102 (-) True XLOC_008019
TCONS_00015663 mRNA downstream 4061 33892300 ~ 33894915 (-) True XLOC_008010
TCONS_00015659 mRNA downstream 26360 33859695 ~ 33872616 (-) False XLOC_008008
TCONS_00015660 mRNA downstream 26884 33860089 ~ 33872092 (-) False XLOC_008008
TCONS_00015657 mRNA downstream 39827 33825482 ~ 33859149 (-) False XLOC_008007
TCONS_00015658 mRNA downstream 40762 33826123 ~ 33858214 (-) True XLOC_008007
TCONS_00015665 mRNA upstream 2689 33939213 ~ 33945799 (-) False XLOC_008012
TCONS_00015666 mRNA upstream 4195 33940719 ~ 33945692 (-) True XLOC_008012
TCONS_00015667 mRNA upstream 36622 33973146 ~ 33978117 (-) False XLOC_008013
TCONS_00015668 mRNA upstream 37397 33973921 ~ 33981544 (-) True XLOC_008013
TCONS_00015669 mRNA upstream 45483 33982007 ~ 34044452 (-) False XLOC_008014
TCONS_00015641 other downstream 420989 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other downstream 421244 33475820 ~ 33477732 (-) False XLOC_008000
TCONS_00015628 other downstream 554003 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015626 other downstream 565395 33333448 ~ 33333581 (-) True XLOC_007990
TCONS_00015612 other downstream 667212 33220856 ~ 33231764 (-) True XLOC_007986
TCONS_00015693 other upstream 1456223 35392747 ~ 35405723 (-) True XLOC_008028
TCONS_00015701 other upstream 1635021 35571545 ~ 35853647 (-) True XLOC_008033
TCONS_00015719 other upstream 2493719 36430243 ~ 36437239 (-) True XLOC_008042
TCONS_00015732 other upstream 4827142 38763666 ~ 38774885 (-) False XLOC_008051
TCONS_00015734 other upstream 4834106 38770630 ~ 38782985 (-) True XLOC_008051

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_12198049_12213054.mRNA True 2154 mRNA 0.50 16 CI01000000 12197752 ~ 12213054 (-)