RNA id: AMCG00011308


Basic Information

Item Value
RNA id AMCG00011308
length 2732
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00011308
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17563585 ~ 17568228 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTCAGTCCAAGCGCAGTCGCTCTCCCATTGGCTGGATCCGAGAGGACAGCTGGGCGGAGAAGTACGGCGGGCGGAAGCGGAGGAAGCGccaTTACCTGGAGACCAAGACCTTGAACGAGAAGTTGGACTGTAAGGACCGGACGGCCCACGAGCACAGTGACGAGTACTCCTCGGGCTTTGAGAGTGTGCGTTGCAGGGACAGAGACTGGCACCATTACAGCAAGTCCTCAGGAGTGAGTGGGAGAAGCCGGAGGAGCAGCCGCCCCAGGCACAGACAAAGGAGACGAGAGAGTCACTCGGCATATCGCTCCTACTCGGTATGCAACTGTCCAGCTTACCTCTAGTGCTTAATGTCACTGGtaccttttgtttctttcctatattgtgtatttaaatggacaccttttaaaatatcattCTTAGAAGCATATGAAATCCAAGAAACAGTGCATGTTTGCTGTATTGtcagttttgattttgaaaatggacaCTGTAATTGTTATACAGGCCTGGATTTTTTCATCTCTGCAGTTAGTGCATATAGTTGGTGAAACAGCAACTACTATAAAACAGCTTTCTTTTGTCCCTTTACTGACaagaagattttaaaaatatgaatgtttatagtgcaattatgtttttgtgttttttaaacaattggGATTTAGCAGTTAGTTTCCGACAAGGACATGCAAAATGAAGACCActtgttcttaatttttttttaaaacgaACTTTGGATGTCTCCCAATTAATCGCTTAGAATGAGGTAATACAAGGAAGAACTCCACCTCAGAAGAAACATAACTGTtagtgtaaaatgaaaaaaaatatcaaattgtaTTGCATATGTGACAATGCTATTTTGAAAGTTATCTGAAAATTTGTTgccatgtttttcttctgtaacaCAAACTATGTGGCCCTGTGCATTTCTGGGGGATGAATTTGAAATTGCTCCTGCCAACCACCCGTGGCCTGGCGCGTTATCTGAATGCCTGAATATCTCCCcgctgaatgaatgaatggcgCGTTCTGCCCTGAATTCACTCTGGTTTATGATGATGTTGCGGCCTGCTTGACCTATCCAGAGGAGTCATCGCAGAAAAAGATCCAGGAGTTTTGAGGATGATGAGGAGGGTCACCTGATCTATCACAGTGGAGACGTGCTAAGAGCAAGATGTATAGAATATTTTTGTAACAATTTTTTAACTTTTCGGAAAAAGAATGTCTAGGATAAAGTGGGGGGGCTTGacagggatttgtttttaaaacttttcttttaataaatgcttttctagtattaaatataaatctacCTTGCTAGTGTTATTGTAAGTAGTACAGAATCCCCGTTTTTGTTaggctttaaagaaaaaaaaaaagtgtaatgctAAATCTAAAAGGTCATTTTGAAAGGAATGCTAGCTTAAAATACTTTGTCCTGTTGATGCTGTTAAATGTAAACTGCCGTTTCAGTCACAGATTCTAActgcttgtttatttctgtagatGAAATTGTGTGCACTTTAGGAGAAGGGGCCTTTGGGAAGGTTGTTGAATGCATTGATCATGAGAAATCCGGTGCTCGTGTAGCACTGAAgatcataaaaaatattgatcGATACCGAGAAGCCGCTGTATCTGAGGTTGAAGTGCTTGAACAGATGAATTCCCTTGACTGTGATAGAAAACAgGCTTGTGTGCGGATGTTAGATTGGTTTGATCATCATGGACATATTTGCATTGTGTTTGAATTGCTGGGACTGAGCACCTATGACTTCTTGAAGGAAAATGGCTTCATGCCTTTCCCACTGGACCAGATCAGGAAAATGGCATATCAGATCTTTAAAGCTCTGCACTTTCTGCATCGGAACAAGCTGACCCACACTGATCTCAAACCTGAGAATATCCTTTTTGTGAATTCGGATTATTACATGGAATATAATCCCAAAATGAAACGTGATGAGAGAACACTGAAGAATCCCGATGTGAAGATTGTGGATTTCGGCAATGCAACCTATGACCATGAGCATCACACATCTGTTGTGTCGACCAGGCATTATAGAGCACCTGAAGTCATTCTTGagCTCGGGTGGAACCAGGCCTGTGATGTTTGGAGCCTTGGTTGTATTTTAATCGAGTATTATCTTGGATTAACACTCTTCCAGaCGCATGACAGCAAGGAACATCTTGCCATGATGGAGAGGGTCCTGGGCCCAATACCCACCTCCATGATGCAGAAAACAAGGAAGCGGAGGTATGTGCATCGCGATCATTTGGACTGGGATGAGCACAGTTCTGCAGGCAGATACGTGAGGAAGCACTGCAGACCGCTTAAGCAATACATGGCTTCTAAAAGTTCAGAACATGAACAGCTGTTTGACCTGATAAGGAAAATGTTGGACTATGACTCCTCCAAAAGAATCACCATGGAGCAAGCACTGAAGCATCCTTTTTTTGACCCCATAAGGAAGGGAGCGAAAAAGCAGTAAAAGACACTGGGATAATGTGCTACCTTCTTACTTTCTCCAGGGGAGATTTCTGTCGACTGCATCAGTCTGCCACAAAACGATCGCTGTTCTCTTCAGTTTGTGTTAACTTATTTGAATTGTTactactgtttttgtttttttggttttacaaATGAAATCAATTTGTACTTTTGAAGATAAACGTGCTGTTTtctcaataaaatgcaaataaagatttatttttctctccctta

Function

GO: NA

KEGG:

id description
K23561 CLK1_4; dual specificity protein kinase CLK1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132235 lncRNA upstream 184725 17378620 ~ 17378860 (+) True G105715
TU132204 lncRNA upstream 251517 17309759 ~ 17312068 (+) True G105684
TU131997 lncRNA upstream 838432 16724688 ~ 16725153 (+) True G105538
TU131909 lncRNA upstream 1363286 16200049 ~ 16200299 (+) True G105466
TU131891 lncRNA upstream 1430598 16132758 ~ 16132987 (+) True G105448
TU132287 lncRNA downstream 166762 17734990 ~ 17742387 (+) True G105756
TU132310 lncRNA downstream 183022 17751250 ~ 17751484 (+) True G105769
TU132318 lncRNA downstream 197663 17765891 ~ 17768221 (+) True G105776
TU132337 lncRNA downstream 431408 17999636 ~ 18000343 (+) True G105792
TU132340 lncRNA downstream 464527 18032755 ~ 18033025 (+) True G105794
AMCG00011307 mRNA upstream 7215 17544765 ~ 17556370 (+) True AMCG00011307
AMCG00011309 mRNA upstream 137087 17417595 ~ 17426498 (+) True AMCG00011309
AMCG00011300 mRNA upstream 255761 17295543 ~ 17307824 (+) True AMCG00011300
AMCG00011302 mRNA upstream 302368 17260015 ~ 17261217 (+) True AMCG00011302
AMCG00011298 mRNA upstream 341066 17219688 ~ 17222519 (+) True AMCG00011298
AMCG00011312 mRNA downstream 2897 17571125 ~ 17579716 (+) True AMCG00011312
AMCG00011310 mRNA downstream 177434 17745662 ~ 17750420 (+) True AMCG00011310
AMCG00011306 mRNA downstream 184546 17752774 ~ 17755758 (+) True AMCG00011306
AMCG00011305 mRNA downstream 189598 17757826 ~ 17761783 (+) True AMCG00011305
AMCG00011324 mRNA downstream 502173 18070401 ~ 18076037 (+) True AMCG00011324
TU132132 other upstream 581344 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 1579506 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 1707801 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 1711196 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 2241160 15320780 ~ 15322425 (+) False AMCG00011241
TU132321 other downstream 215935 17784163 ~ 17788050 (+) True G105778
TU132460 other downstream 1544682 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 1653827 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 2527001 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 2543852 20112080 ~ 20162966 (+) True G106139

Expression Profile