RNA id: AMCG00011813


Basic Information

Item Value
RNA id AMCG00011813
length 1800
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00011813
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5263900 ~ 5273680 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCATGCAAAGGTGCCATGTTGCTAGGTAAATAGTGAGAATGGAAATATTGTAGCTAACTAGTCAGGTGTCAGGTTTCCTCTTGTCTACGGGTAGCAGCCTTCCCtttaacacacagcacaacgACGGCATTCAGAGCACAGGAGCGAATTCCCAGCACTCCCAGTCAAGCCTCTGGTGTCACCTTTCTGTGAGACAAACAGGTTCAGATATGTCCATCCAACCTGTCGTGATTCAGCCAGGACTGGTCTCCGGGCAAATGAAGACCAATGATTGGAGATCAGGGATGTGTGACTGCTGTGATGACATGGGCATCTGTTGCTGTGGCTTCTGGTGTCTGCCCTGCTTAATGTGCAAGACGACTAGTGAATTCGGGGAATGCCTctgtctccccctgctggaCCCGTGGTTTTGCATGGCCGTCACCTGCTCTGTGGGAATGATCCCTCCCATTGCCCTCTCCATGCGCAGCACCATCCGTGAGCGCTACAACATAAAGGGTACAATATGTGGCGACTGCTGCGTGGTGACCTGCTGCAACTCCTGCGCCTGGTGCCAGATGGCCAGAGAGTTGAAACACCACAAGCAGCCCCTGATTATCAGCGCCCCCCAAGCCATGCCAATGGGTCCCTCCTCGGGGGGTTACCCacaaattcaaacacaataCGGGTCCCCTGGACCCTACAATATCATGCCACAATAGAGCCTCACAGTGCTCCAGTCAACATCAACAAAGAGATGGCGAGATATAAAGAGATATTAATTCAGTAGTGCCTGATCAAATTTATAATCAGTTGAGACATGTAGGATTGTTTGGGAGGAAAAAGATAATGAATCACAGAAtccatacatattttatgaatcacttatttttttacttaggAACTCTAgattcatattatatttatattaatttattcttacATAGCCCATTTACGGTGTATATATGTGGATGGGGTGGGGTTAATTTGTACcctatattttcaacatattaagtaaatatttggATTACAGGCACAAATCTGGATAAAGTAaatcccatatattttaaatatacaaaaagtaaaCAGTTTTGctataagaataatataatatactgcgttttaaaaatatttggttgattaatatgcaatttttttaattattaatttgctttaaacattttctcagtTGTTCACATATTCTGTCTCCTGCTGCTATTGTAGTCCTGCAGAGGGCGAAACCCACCCTGCTGTTATATACTGTGCTGGGGGTGAATTCCTCTCTGTGTGAGAGCTAATAACATAGAGACCGCCATGTTATTTCATATCATGCAACTCCATGGTCCTCCTTAAATTCATCTTATctttgtacatatttgtatCTCAAAGGCTGACTGAGCGTGACACTAATCTACACATATACACGCAGCCCATTTTGatacttcagttttttattgtctatttgttcttcttccaactaaatatgtaataaatgtatattgacaGAAATGGCCCTGCATTTCCAATCAACTCTTGTGgaactgtgaaaaaaaataaaaaTTCTGTTTGCATGATTAATAACTGTACAATTACTgatgtttatattaatgtcaGAAAAATATTCTCCTTCTGGGCTTCATATACATGGATATGCTGTGACTGTTAATATAGGGTCATATGAGCTAAAACTCTGGAAGTTTTACTGTCAgtagattgtatttttcaatagCAAATACTAATGAGCTAGTACttgtgtgtataaaaagcaTGTATTTAAAGTCCTAATTTGAGGTTACGAATTGTGGCAAACAGAAGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166554 lncRNA upstream 144056 5115107 ~ 5119844 (+) False AMCG00011806
TU166526 lncRNA upstream 197439 5040958 ~ 5066461 (+) True G132820
TU166528 lncRNA upstream 241079 5021199 ~ 5022821 (+) False G132820
TU166524 lncRNA upstream 244512 5019001 ~ 5019388 (+) True G132818
TU166523 lncRNA upstream 246360 5017310 ~ 5017540 (+) True G132817
TU166749 lncRNA downstream 406788 5680468 ~ 5681398 (+) True G132993
TU166754 lncRNA downstream 408393 5682073 ~ 5682808 (+) True G132997
TU166786 lncRNA downstream 498383 5772063 ~ 5799356 (+) True G133014
TU166859 lncRNA downstream 560135 5833815 ~ 5834041 (+) True G133060
TU166865 lncRNA downstream 570584 5844264 ~ 5845059 (+) True G133066
AMCG00011808 mRNA upstream 11244 5222497 ~ 5252656 (+) True AMCG00011808
AMCG00011807 mRNA upstream 98348 5163230 ~ 5165552 (+) True AMCG00011807
AMCG00011806 mRNA upstream 143802 5115090 ~ 5120098 (+) True AMCG00011806
AMCG00011805 mRNA upstream 296203 4964661 ~ 4967697 (+) True AMCG00011805
AMCG00011804 mRNA upstream 382866 4876935 ~ 4881034 (+) True AMCG00011804
AMCG00011816 mRNA downstream 80176 5353856 ~ 5361606 (+) True AMCG00011816
AMCG00011814 mRNA downstream 130151 5403831 ~ 5410152 (+) True AMCG00011814
AMCG00011815 mRNA downstream 143711 5417391 ~ 5426066 (+) True AMCG00011815
AMCG00011819 mRNA downstream 165281 5438961 ~ 5447855 (+) True AMCG00011819
AMCG00011817 mRNA downstream 198559 5472239 ~ 5476759 (+) True AMCG00011817
TU166232 other upstream 1320538 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 1325508 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 1367721 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 2059303 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 2259238 3001432 ~ 3004662 (+) True G132221
TU166792 other downstream 486178 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 555121 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 613325 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 613325 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 982270 6255950 ~ 6256682 (+) False AMCG00011876

Expression Profile