RNA id: AMCG00012454


Basic Information

Item Value
RNA id AMCG00012454
length 1500
RNA type mRNA
GC content 0.64
exon number 14
gene id AMCG00012454
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18389831 ~ 18401677 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCACGCCCCCTGGCTGGCCCGTTCGTGACGTCACTGTGGCGCCCCCTCTCTGCACAACCATCAACTGGAAGAGCAGCTCAGATCCTGCAGCAATGGCAAAGTGTGGGAAATGCGGACCGGGCTACAAGAGCCCCCTGGATGCCATGAAAGGCCCCAGAGAGGAGATTGTCTATGTGCCCTGCATCTACCGCAACACTGACATCCAGAAGCCCGATTACCTAGCAACAGTGGACGTGGACCCCAAATCGGCCACCTTCTGCCAGGTGATCCACAGGCTGCCGATGCCCAACCTGAAGGACGAGCTGCACCACTCGGGCTGGAACGCCTGCAGCAGCTGCCACGAGGACGCCTCCAAGAAGCGGGACCGGCTCATCCTGCCCGCGCTCATTTCCTCCCGCGTCTACGTGGTGGACGTGGGCACCGACCCCCGCGCCCCGCGCCTGCACAAGatggtGGAGCCCACGGAGCTTTACTGGAAGTGTGGTCTGGCGAACCCCCACACCTCGCACTGCCTGGGCAGCGGGCAGGTGATGATCAGCACCATGGGCGACCCCGAGGGCAACGGCAAGGgggGCTTCGTCCTGTTGGACGGGCAGTCGTTTGAGGTGATCGGGAACTGGGAGCTGCCGGGGGAGGCGGCCCCCTTCGGCTACGATTTCTGGTACCAGCCGCGGCACAACGTGATGATCAGCACGGAGTGGGGCGCCCCCAAGGCCCTGGCCAACGGCTTCAACCCAGAGGACGTCAAGGCCGGGCATTACGGGCGTCGGCTGCACGTGTGGGACTGGACCACGCACAAGAAGCTGCAGACCCTGGACCTGGGCGAGGAGGGCGCCATCCCCCTGGAGGTGCGCTTCCTGCACAACCCGGCCGCCCCGCAGGGCTTTGTGGGCTGTGCGCTCAACTCCAGCGTCTTCCGCTTCTACAAGACCCCGaagGGAGACTGGGCGGCAGAGAAGGTCCTCAGTGTCCCTGGCAAGAAGGTGGAGGGATGGATGCTGCCGGAGATGCCAGGTCTGATCACGGACATCCTGATCTCTTTGGACGACCGCTTCCTGTTCTTCAGTAACTGGCTGCACGGAGACATCCGCCAGTATGACATCACCGACACCAGGCACCCCAAACTGGTGGGGCAGGTCTTCCTGGGCGGCAGCATCCTGAACGACAGCCCCGTCAGAGTGCTGCAGGACACCGAGCTTGAGAGTCAGCCGGCGCCCCTTGTGGTGAAGggGAAGAGGGTCCGCGGGGGTCCACAGATGATTCAGCTGAGCCTGGACGGGAAGCGGCTGTACGTCACCACCTCTCTGTACAGCGGCTGGGACCGGCAGTTTTACCCGGACCTCATCAACTCAATGAGAATTTCCTGGTGGATTTCGGCCGGGAGCCCGAGGGTCCGGCTCTGGCCCATGAAGTCCGCTATCCTGGGGGCGACTGCACCTCCGACATCTGGCTCTGAGCCTCGGGGGGGCGGGGTGAAGGCTCGGCACTTCCCTTAA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0008430 selenium binding molecular_function

KEGG:

id description
K17285 SELENBP1; methanethiol oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172043 lncRNA upstream 72755 18295215 ~ 18317076 (+) True G136848
TU172036 lncRNA upstream 120324 18261897 ~ 18269507 (+) True G136842
TU171869 lncRNA upstream 488175 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 725661 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 736369 17649265 ~ 17653462 (+) False G136569
TU172070 lncRNA downstream 31893 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 66129 18467806 ~ 18470784 (+) True G136866
TU172078 lncRNA downstream 71556 18473233 ~ 18474916 (+) True G136873
TU172188 lncRNA downstream 214221 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA downstream 214221 18615898 ~ 18637938 (+) False G136969
AMCG00012446 mRNA upstream 13838 18353011 ~ 18375993 (+) True AMCG00012446
AMCG00012447 mRNA upstream 38930 18329924 ~ 18350901 (+) True AMCG00012447
AMCG00012440 mRNA upstream 152643 18229745 ~ 18237188 (+) True AMCG00012440
AMCG00012431 mRNA upstream 210014 18174010 ~ 18179817 (+) True AMCG00012431
AMCG00012432 mRNA upstream 220087 18162576 ~ 18169744 (+) True AMCG00012432
AMCG00012451 mRNA downstream 628 18402305 ~ 18414912 (+) True AMCG00012451
AMCG00012452 mRNA downstream 15286 18416963 ~ 18442351 (+) True AMCG00012452
AMCG00012453 mRNA downstream 43434 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012457 mRNA downstream 75034 18476711 ~ 18491471 (+) True AMCG00012457
AMCG00012456 mRNA downstream 91907 18493584 ~ 18512606 (+) True AMCG00012456
TU172065 other upstream 1525 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 255450 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 486021 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 545910 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 594614 17792251 ~ 17795217 (+) False AMCG00012423
TU172158 other downstream 137868 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 768071 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 836012 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1413248 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 1489490 19891167 ~ 19895599 (+) False G137265

Expression Profile