RNA id: TU166117


Basic Information

Item Value
RNA id TU166117
length 2589
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G132466
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3669681 ~ 3672437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAAGTGTATCTTTGTTTGTATAAAATCAGGACACCTGGTGGCAGGAATAATTATCCAAACTTATCAATTAGGATGTATATAAACATCACCTTCCTTAGTAAGGCTAGAATTGTAAACCTAAATGAAGCCTGGGAATTGAATTACACAGCAAATCTAAAGTCACTGAGTGCGAGTTCATTTCAGCTTCTTGCATCGTCTCATCATGGCTATTTTGCAGTTGATTTCAGAGAGATAGAAAAGGTGTAGTGTTGTCTTGTCAAATTGAAAGAGAACAATTCCTGGTTGTGATTTCAAAACCatgctgtttttcttcacatattTGATGATTGCCAAActcacaaacaagcaaaaacgtTGATTTACAACAGCTTATTCACACCCAACAGAAAGAACTTTTACACCACGTTGACTCAGAATTGTATTTTCCCAGTGTTTTTTCTGGACAGTAAAGGAGCTGGCTGACGGTTACAATACAATGATACATATAACTActtacataaaattaaaattacacaaacagtTAATTTACAAATCTAATCCAATGCAGATTATCTCTAGTATGAATACACTGCTGACACTTAAGGTTGCATGCTTAACTGAAGCTCTTTCCACTTTGGGAGCTGCTGTGCAATTTCTTTCGTATGTGACTGAACTGGTGACGTTTAAGGTTTGATGCACCAGTGAagcacttcccacactgggtgcagctgaacggtttctctcctgtgtgaatgcgctggtgataTTTAAGGGTTTCTGCCTGAGTGAagcacttcccacactgggtgcagctgtacggtttctctcctgtatgAATGTGCTGGTGACATTTAAGCTGTACTGCCTGAGTGAAGCACATCCCACACTGGGTGCAACTGTAAGGTTTCTCTCccgtgtgaatgcgctggtgagatTTAAGCTGGGTTGCCCGACTGAagttcttcccacactgggagcagctaTATGGTTTCTCCCCTGTGTGAACGTGCTGGTGAGATTTAAGGCTTCCTGATGTAGTAAagttcttcccacactgggtacAGCTGAACGGTTTCTcgcctgtgtgaatgcgctggtgaaaTTTAAGGGTTATTGCCTgagtgaagctcttcccacaatgggtgcagctgtacggtttctcccctgtgtggatgcgctggtgagatttaaggCTTCCTGATGTAGTAAagttcttcccacactgggtgcagctgtacggtttctctcctgtgtgaatgcccTGGTGATATTTAAGGGTTCTTGCATTACGGAagttcttcccacactgggaacaGTTGTACGGTTTCTCCATGGTGTGGATGCGCTGGTGAGATTTAAGTCTTCCTGATGCATTGAagcacttcccacactgggtgcagctgtacggtttctctcctgtgtgaatgcgctggtgaatTGTCAGATTTCTTGCACAACTGAAACTCGTCCCACACTGGGAACAGTTGTACGGTTTCTCCCCTGTGTGGATGcgctggtgagatttaaggCTTGATGAATGAGTGAagcacttcccacactgggtgcagctgtacggtttctctcctgtgtgaatgcgctggtgataTTTAAGGGTTCTTGCATTACGGAagttcttcccacactgggaacaGTTGTACGGTTTCTCCCcggtgtgaatgcgctggtgataTTTAAGGCTTCCTGATGCAGTGAagttcttcccacactgggtgcagctgtacggtttctctcctgtgtgaatgcgctggtgagatttaaggGTTCTTGCATTACAGAagttcttcccacactgggtgcagctgtGCGGTTTCTCttctgtgtgaatgcactgGTGAATTGTCAATTTTGCTGCCtgactgaagctcttcccacactgggtgcagctgtGCACTCTTTTCCTTGTAAGAATgcattggtgtttttttaagcttCCATAATTCCTATACATTTTCTCACACTGGGGGCAGCGATGGTAGCCCAGAGTTTTCCTACTTGTGTTTGAGGGAGGGGGGTCAGAGCTGGAGGGTCCAGGATGCTGTCTGGACTGTGAAGATGGGCTCTCACccctcactgcactgtcactgcCTCCACTGAGCCCCGTCCTCAAGGCAACAGAATCAGTGTCACACAGTCCATCTACTGGGAGCTGTGGTTCTAGTTTACAGAGGCCTCCTGTAATATTCTCTATTCTAAGATTACAGGGTTCATCTTTCAAAACTGTATGCATTTCCCACTCCAGCTCATTGTCCTCTGTCTTAATGTGAACAGACGCAACACTGGGCTCACACTGTGTACTGGTAGAGTCTGGCTCAAcaccagctgcactgggtccacactcagatCCCAGTGCCCTGAGTCCCTGTGTTAAACCCACAGTCTGTGGCTCCACCATGTGGCCAGACTCCAGTCCACTGAGCTCCATTTCACTGTGTCTGCTCCCGTGCTGCTCAGACAGACTCTTGTTGTCTTCAgtagctgtgggctctgtgtcctgcctcagactggagccccACTCCTGCTCACAGGGCTGCTGCTCAGTGGGAGACCTTTTCCCAGAGTCAGGGAAGGTGGTGTCTTCTACAGCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166078 lncRNA upstream 101241 3567887 ~ 3568440 (+) True G132433
TU165866 lncRNA upstream 419574 3169738 ~ 3250107 (+) False G132270
TU165902 lncRNA upstream 423829 3238486 ~ 3245852 (+) True G132293
TU165865 lncRNA upstream 498453 3169738 ~ 3171228 (+) True G132270
TU165861 lncRNA upstream 554374 3104160 ~ 3115307 (+) True G132268
TU166120 lncRNA downstream 21068 3693505 ~ 3713698 (+) True G132468
TU166132 lncRNA downstream 81510 3753947 ~ 3785196 (+) True G132480
TU166159 lncRNA downstream 115790 3788227 ~ 3788440 (+) True G132506
TU166161 lncRNA downstream 119792 3792229 ~ 3792501 (+) True G132508
TU166164 lncRNA downstream 127874 3800311 ~ 3822313 (+) True G132510
AMCG00011759 mRNA upstream 2132 3661364 ~ 3667549 (+) True AMCG00011759
AMCG00011755 mRNA upstream 178126 3484762 ~ 3491555 (+) True AMCG00011755
AMCG00011754 mRNA upstream 220847 3448466 ~ 3448834 (+) True AMCG00011754
AMCG00011750 mRNA upstream 221834 3440089 ~ 3447847 (+) True AMCG00011750
AMCG00011749 mRNA upstream 257537 3409473 ~ 3412144 (+) True AMCG00011749
AMCG00011762 mRNA downstream 182972 3855409 ~ 3869281 (+) True AMCG00011762
AMCG00011761 mRNA downstream 210188 3882625 ~ 3889058 (+) True AMCG00011761
AMCG00011770 mRNA downstream 221275 3893712 ~ 3896735 (+) False AMCG00011770
AMCG00011769 mRNA downstream 239463 3911900 ~ 3914902 (+) True AMCG00011769
AMCG00011774 mRNA downstream 247232 3919669 ~ 3922626 (+) True AMCG00011774
TU165868 other upstream 465084 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 665019 3001432 ~ 3004662 (+) True G132221
TU165616 other upstream 728510 2938370 ~ 2941171 (+) True G132072
TU165599 other upstream 789421 2877274 ~ 2880260 (+) True G132058
TU165585 other upstream 811397 2852870 ~ 2858284 (+) True AMCG00011718
TU166214 other downstream 219944 3892381 ~ 3896179 (+) False AMCG00011770
TU166218 other downstream 231238 3903675 ~ 3938392 (+) False AMCG00011771
TU166232 other downstream 269496 3941933 ~ 3943362 (+) False AMCG00011771
TU166792 other downstream 2087421 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 2156364 5828801 ~ 5829532 (+) True G133059

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU417004 True 2918 lncRNA 0.43 3 NW_019172835.1 110032 ~ 118172 (+)