RNA id: AMCG00013749


Basic Information

Item Value
RNA id AMCG00013749
length 4719
RNA type mRNA
GC content 0.57
exon number 27
gene id AMCG00013749
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41236306 ~ 41279477 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCAGTCTCAGCCTTGGGGTTCTGATGAAGGCTGGGATGAGAGCAGCTCCATCAGTAGCGGACTCAGCGATGCATCTGACAACCTCAGCTCAGAGGAGTTCAACGCCAGCTCATCCCTCAACTCTTTACCCACCACGCCTATTGGCTCTCGTAGAAACTCTGCCATTGTGCTGCGCACAGATGCAGAGAAGCGCTCTCTGGTGGAGAGCGGGCTGTCGTGGTACAGTGAGGACGGCAAGGCCCACCGCAAGCCTGACGGCACTGGCGGCTACGACACCGGCAGTCTGAAGACCGAGACCTCTAGCAAGTGGAGGAAAGTGCGTCCCGAGGCCAGTGCCGAGGAACCAGCCAAGGGGGAGCTGAAGAAGCCACAGAGCCTGGGCCAACCCAGCTCGTTCAAGAAGGGAAAGAACCCACCCGTGGGCGTCACCTCTCCCATCACGCACACCTCACAGAGCATGCTCAAAGTTGCAGCACCTAAGAGCGAACATAAATTGGTGGACAAGGCCAAGATGGCGGTTAAAGCATCCAGCCTTCAGAGGTCCTGCTCAGATGCCGGGAAGGACCGCGGAGAATCCAGGAAGCCTCCCTCGGGAATTGCCCGGCCCTCAGCAGGGAGCTCATTCGGCTACAAAAAGCCACCCCTGGCCACCGGCACGGCTACGGTGATGACGGCAGGAGGGGCCACCATCTCCAGCGGCTCGGCCACGGTTGGAAAGACTCCCAAGACCTCGGGCATCCCCGTGAAGCCAGTGGGTGgcggtggaggaggaggggggggaggaggcggaggaggaggaggaggaaggaagaACAGCTTGGATGTTTCCAACTGTGCTGAAGGGTTCCTCTCCCCCAACGCCCGCAGCAACATCCAGTACCGCAGTTTACCGCGTCCAGCCAAGTCCAGTGCCATGACACTGACAGGCAGACACGGTTCGCGCCCCATCAGCAGCACCATCGATGCCAGCTTGCTGAGTTTGAAGCCAGCCAGCAGCGGCTCACGTTTGAAAGAGCCGGGCTCCGGCAAGTCAAGTGGCCGGATGAGCATGGGGCCGGTCAACCAGACCGACCGCGAGAAGGAGAAGGCCAAGGCCAAGGCTGTGGCTTCTGACTCGGAGTGCGGGTCTTTGAAATCAGCAGCCCCCACCTCCCAGACCCCCCAGGAACCCAGCTCCAAAATACAGAGCCTCCGGCAGTCCAGTGGGGGCAAATATTCCGAGCTGTCCTCTCCGACCACACACAGGGTGCTGAGCTCCAAGTCTCTGGGTAAGCCCCCCTGCCTAGCCCACCTGGATAAGGTGAACTCCAACAGCCTGGACTCAGGGATGAGTGTCCAGGACCACCCCCCCACGGTGGCCCCATACTCCAAGATGCCCGAGTTGCCTGGATCCGGGAGCCCCTGCCTCACCCCCAGCCCTGCCCCTGTCCTCAACATTGACTCTACCAGCTGCTTCTCCAACCAGCCCCTGAGCCTCAGCTCGTCCCCCCTGCTCTACCCCAAGCTCTCTGGCCTGCACCGCAGCATGGAGTCCCTGCCCCTGCACATGAGTGTGTCCCCCAGCGTGGGCTACCCCAGCGCTGAGCCCAGGGACAAGGAAGAGGAGCGCAGCACCGGGGGCTGGAGTGCCGCCACCCGAGCCTCCCTCACAGACAATTCTCAAAGGGATCGGAACACTCTGCCTAAGAAGGGATTAAGCCGCTATAGCTCCTGCCAACCAGAGGAGGACAGCAAAGAACGGCGCCACTCGCACACCATCGTGAGTCTGACAGAGGCCGAATGCCCCCCTCAACTACCGTCCCcttcctctgtgtctctgtcctccAATGGCAAAGCCCCCTTCACCAATGTCGTGAACCCCAGTCCCTCCAGCGCCCCCCGGATGACCCGCTCCAATAGCATCCCCACCCACGATGCCGCCTTCGAGCTGTACGGGGGCTCGCAGATGGGCAGCACCCTGTCGCTGGCGGACAGACCCAAGGGCATGATCCGTTCCGGGTCCTTCCGAGACCCCGTGGATGATGTCCACGGCTCTGTCCTCTCACTGGCATCCAGCGCTTCGTCCAACTACTCCTCGGCTGAAGAAAGGATGCAGGGAGAGCAAATCCGTAAGCTGCGGAGGGAGCTGGAGTCCTCTCAGGAGAAAGTGGCAAATTTGACCACCCAGCTGTCTGCCAATGCTAACCTGGTGGCAGCGTTTGAACAGAGCCTGGCGCTCATGACTTCACGGCTACagagtctgtctgtcagtgctgAGCAGAAGGACACAGAGCTGCTGGACTTGCGCGAGACGATCGAGCTGCTCAAGACCAAGAACACAGAAGCCCAGGCGGTGATTCACGGAGCTCTGAACAACCCTGACGTCACGCCCAAAGAGCTGCGGATAAAGCGCCAGAACTCATCAGAAAGCATCTCAAGTCTAAACAGCATCACCAGCCACTCCAGCATTGGCAGCTGTAAGGATGCCGATgccaaaaagaagaagaagaagagctGGCTGAGGAGCTCCTTCAACAAGGCGTTCAGCATCAAGAAGGGCCCCAAGTCCGCCACCTCGTATTCTGACATCGAGGAGATCGCCACACCGGACTCGtccgccccctcctccccaaaactgtcccATGATGGGGGCGACAACCCCACCTTGTCCATCAAGTCATCCACGTCCACCTCCTCCTCAGTAATCTTTGAGGGCAACGAGGAGCCGGAGAATGAGGAGAAGGTGGTGTCTGAGCTGCGCTCGGAATTGTGGGAAAAGGAAATGAAGCTGACAGACATCCGACTGGAGGCTCTGAGCTCCGCCCACCAGCTGGAGCAGCTCCGAGAGGCTATGAACAACATGCAGATGACTGTGGAGAACCTGAAGGCTGAAAATGACCAACTCAAGACAGGGACAGGCCCCGCCCTCAGCACCATCCCTCCGACTTCCTCCATCTCCCAACCTCAGGGCTTGACCTCGCTGCTGACCCAGTCACCACGGCAATCCATGGCCATGTCCCTCACCTCGTCCTTCAGCTTGAGCCTCAATGAGTGCAATGACCCAGGCAAGGAACAATTCTGGGATCTGTCTCCTATGGATGTGATGAGCATCTCCTCTCAGAAGGACGATCACCGCCTTCGTGTTCTGGTCCGCGTGGCAGACCAGCGGGTCTTCAAAGATGACATAAAACAGCAGGATTTCTTCATCGGTTCGGCAAAACTCAATGGAAAAACTGACTGGGCAATGCTGGATACTGCTGTCAGCCAGCTGTTCAAGGACTACATCACAAAGGTGGACCCAGCCTCCAGTCTCGGTCTGTCCACCGATTCCATCTATAGCTACAACATCAACAGTGGCAAACGAGTCCTGGGAGTAGAGGCACCTGAATTAATGCCAACGAAGTGCATGGGCAAAGGATCCAACAGCATTGCAGTGACTTTGAAAGGTCTGAAGGAGAAGTGCGTGGACAGTCTGGTGTTTGAGACCCTCATCCCCAAGCCCATGATGCAGCATTACATCAGCCTGCTCCTGAAGCACCGCCGCCTCATCCTGTCGGGACCCAGCGGGACGGGCAAGACCTACCTCACCACCCGGCTGGCAGAGTACCTGGTGGACCGGTCTGGGCGCGAGGTCACGGAGGGCATCGCCGTCACGTACAATATGCATCAGCAGTCATGCAAGGACCTGCAGCTGTACCTTTCCAATCTGGCCAATCAGATTGATCGGGAGACCAGCGGAGATGTCCCATTGGTTATTATCCTGGATGACCTCAGTGACTCGGGGTCAATCAGTGAGTTGGTCAATGGCGCCTTGACCTGCAAATATCATAAATGCCCTTACATCATTGGAACAACCAACCAGCCTGTAAAGATGACTCCAAACCATGGCCTGCACCTTAGCTTTAGGATGGTGACCTTCTCCAACAACGTAGAGCCAGCGAATGGCTTCTTGGTGCGCTATCTGCACAGGAAGCTGATTGAAGCGGAGAACGAGGGCAGCGCGGGCAGCGAGGAGCTCTTGCAAGTGCTGGATTGGGTGCCCAAGCTCTGGTACCACCTCCACACCTTCCTAGAGAAGCACAGCACGTCCGACTTCCTCATTGGACCCTGTTTCTTCCTGTCCTGCCCGGTCACCGTGGAGGAGTTCCGCTCCTGGTTCATTGACCTGTGGAACCACTCCATCATCCCCTACCTGCAAGAGGGGGCCAAAGACGGAATTAAGgtACACGGTCAGAAGGCAGTGTGGGAGGACCCAGTGGAGTGGGTGCGGGGCACCCTGCCCTGGCCGTCCGCCCAGCAGGACCAGGCAAAGCTTTTCCACTTGCCCCCTCCCAGTGTGGGTCCAGTCGGCACAGGGCAGACCTGTGAGGAGCGGGTAGCCAAGGAGACCACGCCTAGCACCCTTGACTCTGACCCACTGATGGCCATGCTGTTGAAGCTCCAGGAGGCAGCAAATTATATTGAATCTCCTGACCGCGAGACAGTGGCAGATCCCAACCTCCAATCCACACTTTGAAAATTACATGGAAACTAAAGACTGAATACTCTCGGATGGCTAGTGCTGTTAAGAAGCTTTCTACCATGTTTTCCATTAATCGGCGGGCCTGCAGGTGTTTGGGAATTGGATTCCATCTTGTTTTGGCTGAGTTACAAAAAGGAACTAGCAGACACAGTCTGTTCTGTATCTATTAGAGCTAAATatagtacttaaaaaaaaaaaaaaaaaaaaaaaaca

Function

GO: NA

KEGG:

id description
K16776 NAV1; neuron navigator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57963 lncRNA downstream 61516 41171725 ~ 41174790 (-) True G46491
TU57946 lncRNA downstream 132340 41099703 ~ 41103966 (-) True G46484
TU57934 lncRNA downstream 174482 41053148 ~ 41061824 (-) True G46476
TU57913 lncRNA downstream 250032 40983633 ~ 40986274 (-) True G46459
TU57912 lncRNA downstream 252749 40983132 ~ 40983557 (-) True G46458
TU58033 lncRNA upstream 143294 41422771 ~ 41426128 (-) True G46547
TU58041 lncRNA upstream 162457 41441934 ~ 41442165 (-) True G46555
TU58057 lncRNA upstream 187545 41467022 ~ 41472543 (-) False G46565
TU58058 lncRNA upstream 187545 41467022 ~ 41477661 (-) True G46565
TU58132 lncRNA upstream 501965 41781442 ~ 41788539 (-) True G46630
AMCG00013748 mRNA downstream 9204 41222891 ~ 41227102 (-) True AMCG00013748
AMCG00013747 mRNA downstream 14172 41203064 ~ 41222134 (-) True AMCG00013747
AMCG00013742 mRNA downstream 240898 40992789 ~ 40995408 (-) True AMCG00013742
AMCG00013738 mRNA downstream 309117 40889729 ~ 40927189 (-) True AMCG00013738
AMCG00013737 mRNA downstream 347855 40884954 ~ 40888451 (-) True AMCG00013737
AMCG00013750 mRNA upstream 18083 41297560 ~ 41360478 (-) True AMCG00013750
AMCG00013751 mRNA upstream 234127 41513604 ~ 41536486 (-) True AMCG00013751
AMCG00013752 mRNA upstream 327504 41606981 ~ 41608265 (-) True AMCG00013752
AMCG00013763 mRNA upstream 509423 41788900 ~ 41802299 (-) True AMCG00013763
AMCG00013764 mRNA upstream 538568 41818045 ~ 41833392 (-) True AMCG00013764
TU57875 other downstream 627778 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 648914 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 807681 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 961208 40273391 ~ 40275098 (-) True G46333
TU57492 other downstream 2453157 38782093 ~ 38783149 (-) False AMCG00013685
TU58280 other upstream 1420029 42699506 ~ 42701068 (-) True G46742
TU58927 other upstream 4343761 45623238 ~ 45623895 (-) True G47261
TU59115 other upstream 4644445 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 4684414 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 4795952 46075429 ~ 46083542 (-) True AMCG00013890

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_16895536_16961467.mRNA True 5653 mRNA 0.55 30 CI01000340 16895489 ~ 16961574 (+)