RNA id: AMCG00013750


Basic Information

Item Value
RNA id AMCG00013750
length 1506
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00013750
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41297560 ~ 41360478 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTGGGGCTAGTGTGAAAGGCAGAGAATCAGATATCAAGACTGAGCTTGAGGAGAGCACCAAGGCATACGTTCAACCAGAGGGCAAAGGGACAGGTATGGCATCCAAGCGGAGCAAGGCTGGTGTCCCCCCGGGAGCCCCACGGGCAGAGCTCAGGGTCTTTCGGGCGGGCAGCTCAGAAGGGCGCCTGCCGGTATCTTCCAACCTCCGCAAGCAGAAGTCCCTCACCAACCTGTCCGTCCTCACCGACACCGAAAAGAAGATGCATCTGTATGAACCCAAGTGGTGCGATGACATGGCAAAGCCCAGCTCAGCCTACATCAAAGGGGGCAAATCCAAGGAAGGGGGAAGCGGGGGGGCGCTGTCCcgcaacctctccaaatcggagcACTCCCTCTTCCAGGGGAAGCTGACACCTGGATCTCTGGGAGGTCCGCCAAAGCCTTTCAGCCCACTGGCAGCGCCCTCCAACCTGGGCAAACCCAGCCGTATACCCAGAGGTCCCTATGCTGAGGTGAAACCTATCAGCAAAGCCCCAGAGGCTGCAGAAGACAGCAAATCAGACGATGAAATTCTCTCCAGCAAGGCCAAGGCTAACAATAAGAAGCAGGCAGGCACCCCCGTGGCTCCTGGTGGCAAGGGACAAACCGATGAGGAGAATAAACCCTACCTGAAAGTGGACCCTGAACTGGTTGTGACAGTACTGGGAGATCTAGAGCAGTTGCTGTTCAGTCAAATGTTGGACCCAGAGTCCCAGAGGAAGCGAACTGTACAGAATGTTCTGGATCTGAGGCAGAACCTGGAAGACACCATGTCCAGTCTGCGGGGGTCACAGTTAAGTCACAGCTGCTTGGAGAACAGCGTGTGCTATGACAGCGACGAGACCAACCCGCGCAGCGTGTCCAGCATGTCCAACCGCTCGTCGCCACTGTCCTGGCGGTATGGCCAGTCCAGTCCGCGCCTGCAGGCAGGGGACGCCCCTTCCTCGGCGGGGGGCTATCACGGCCAGGGCGCCCAGTATGCCTCCCACACCATGCCCATGAGGAGCCCCAGCCGACTCAGCCATATCTCCCGCATTGAGCTGATCGAGGGCCTGGATGCCGATGACTCTGACCTCAAATCCGGCTACATGAGCGACAGTGACCTTCTCAGCAAGAGCTTGCATGAGGACGAGGACGATGACCTGGCGAATGGATCTAAGCAGTTTATCATCAGGCTTTACAGTACTTTCCTGATCCAAGTGGACTACTCAACTCTTACTTTGGAAGAATTAGACAGGCTTCAAGCCAGTGCAGGCAGCGTGATTATTGAGTTCCTATCAGGTGCTGCATCCGCACGCGTCTGTGGCACTGCTCACTGGAGCAAGGAGGAGGATGCTGCTGCATTCCACAGACCCCGTGCTCGTCGCTATGGCAACAACATCCTCTGTGTGATGTTGGGACCGTGCGCGGGAGCCGAGCGACGTGCGGGCGAGACGAGAGAGGGACGAGAAGCCATCGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57963 lncRNA downstream 122770 41171725 ~ 41174790 (-) True G46491
TU57946 lncRNA downstream 193594 41099703 ~ 41103966 (-) True G46484
TU57934 lncRNA downstream 235736 41053148 ~ 41061824 (-) True G46476
TU57913 lncRNA downstream 311286 40983633 ~ 40986274 (-) True G46459
TU57912 lncRNA downstream 314003 40983132 ~ 40983557 (-) True G46458
TU58033 lncRNA upstream 62293 41422771 ~ 41426128 (-) True G46547
TU58041 lncRNA upstream 81456 41441934 ~ 41442165 (-) True G46555
TU58057 lncRNA upstream 106544 41467022 ~ 41472543 (-) False G46565
TU58058 lncRNA upstream 106544 41467022 ~ 41477661 (-) True G46565
TU58132 lncRNA upstream 420964 41781442 ~ 41788539 (-) True G46630
AMCG00013749 mRNA downstream 18083 41236306 ~ 41279477 (-) True AMCG00013749
AMCG00013748 mRNA downstream 70458 41222891 ~ 41227102 (-) True AMCG00013748
AMCG00013747 mRNA downstream 75426 41203064 ~ 41222134 (-) True AMCG00013747
AMCG00013742 mRNA downstream 302152 40992789 ~ 40995408 (-) True AMCG00013742
AMCG00013738 mRNA downstream 370371 40889729 ~ 40927189 (-) True AMCG00013738
AMCG00013751 mRNA upstream 153126 41513604 ~ 41536486 (-) True AMCG00013751
AMCG00013752 mRNA upstream 246503 41606981 ~ 41608265 (-) True AMCG00013752
AMCG00013763 mRNA upstream 428422 41788900 ~ 41802299 (-) True AMCG00013763
AMCG00013764 mRNA upstream 457567 41818045 ~ 41833392 (-) True AMCG00013764
AMCG00013762 mRNA upstream 474078 41834556 ~ 41863407 (-) True AMCG00013762
TU57875 other downstream 689032 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 710168 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 868935 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 1022462 40273391 ~ 40275098 (-) True G46333
TU57492 other downstream 2514411 38782093 ~ 38783149 (-) False AMCG00013685
TU58280 other upstream 1339028 42699506 ~ 42701068 (-) True G46742
TU58927 other upstream 4262760 45623238 ~ 45623895 (-) True G47261
TU59115 other upstream 4563444 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 4603413 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 4714951 46075429 ~ 46083542 (-) True AMCG00013890

Expression Profile