RNA id: AMCG00014680


Basic Information

Item Value
RNA id AMCG00014680
length 1560
RNA type mRNA
GC content 0.36
exon number 5
gene id AMCG00014680
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26886487 ~ 26890130 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAACTTTTTCTCGCAGCTCTGACCAACGCTTTTCCTCTTTGTGCCTGATTAATATTTCAATGGTTAGTCACACCTGATGAGGACGTCTTGCAGTATCCAGTTGCAGGTATAAAAACAGTCTTTATGGGAGATCAGGTTGCTTTAACACAGACATCGAAAGCAGACAGTACAGACACTAGTTTACACTCACAGAAATGAATAGAATGGAGGTTAAGAGTCAAACTGCGCTCTTCTTGCTATTGCTCTGCTGGGTGGTCGCAATACTGTCCTATCCCACTGGAGCCCCTGTGGGTCAATGTGTGATGATGACTCCAAACCATTCCAACGCGACCCTCTCCAACATGTCTTCTCCCTACTCAGTAACTGTGAATGCATCTACATACGTGCTCGGAGGCATTATAaaagTGTACATAAATTCATCAGTCCCCTATAGAGGTATTTTGCTGGAGGCTAGGGATGTCAACACTTCTGCCATTGTTGGCACTTGGAAAGATCTATcaactaatacaaaaacattaaattgTGGACTTGGAACCAATAACGCAGTAACTCATTGCAATAATACAGATAAATCTGGGTTGGTTTATACCTGGGTGGCCCCTGCAAAAAATGGCCCTAACAAAGTTGTATTCATGGCTACTGTTGTCAAAATAAGGGTAGAATACTGGATTGAACTCAAATCTTCAGAGCTAACATTAGcTACCACTGGAGCGGCCTTTGGGCTGAAAAGCAGTGCCTTTGTTACTTTGTCACTGTTGTCATTGGGTCTTGTCCATTTTCTCTGATTTTCCCTTCCTGTGTATGGAGTGGATCCCTTCACTTCTCTCTCTAGCCTAGAGGATAAATGTACTCAATTTACAGCTTTAGTTTAGTGAGATAAAGATTCTATCCATGTGTTAAATTCACCTCTTTGATCTAGTTTGTCTACTTCCTAGATAGTTTATGAATATCATTGACAtcacacattttgcacaaaTAACTCCTACACAAGAATGTGTCCAACCCTATGGCATTTTGATTCCCCTCTTCTGTAACGGAGTTGTGGATGTCTTGTGGCAATGTGCAATATTTATTgctataataattaattatatatatatatattttttctatttaaaatgggTTTTAGGAAATgccttcttttaaaaaaaaactaccaatCTTCtaccttttatttaaataattttgatatGGTTTTGCTGCAGCTTTTCTGTATTAATTTGACAGGTACTTccgtatattaatatatatatatatatatatatatatatattagccgCACAAAAGAAGAACTTTATAAAGAAGGAGGAGTGTGTTGTAGATTTAACCTTTTTATAACATTCTTGGAAAACGTATTTTCTTCAATTGTTTGTGTGctatgtcttgttttgtttaacgaCTAGTTTGACAATGCCTCTTGTAAGATGAGTTGGAAAACAGCTATTGTAAATAGGTGAATTGTCTTCATctgtttatttaactttcattaatatttacctaatgttttcatgttggtatgttttcctttgttattcaaaaataaacagtttctcTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89834 lncRNA upstream 654922 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 875487 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 926785 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 1115998 25770209 ~ 25770489 (+) True G71784
TU89729 lncRNA upstream 1138079 25745803 ~ 25748408 (+) True G71772
TU89946 lncRNA downstream 14747 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 62166 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 136645 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 584934 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 1350436 28240566 ~ 28297484 (+) True G72169
AMCG00014682 mRNA upstream 4691 26869226 ~ 26881796 (+) True AMCG00014682
AMCG00014681 mRNA upstream 20247 26859733 ~ 26866240 (+) True AMCG00014681
AMCG00014677 mRNA upstream 257780 26624761 ~ 26628707 (+) True AMCG00014677
AMCG00014676 mRNA upstream 298093 26585481 ~ 26588394 (+) True AMCG00014676
AMCG00014670 mRNA upstream 477396 26389232 ~ 26409091 (+) True AMCG00014670
AMCG00014684 mRNA downstream 602 26890732 ~ 26900814 (+) True AMCG00014684
AMCG00014687 mRNA downstream 18228 26908358 ~ 26909374 (+) False AMCG00014687
AMCG00014685 mRNA downstream 35704 26925834 ~ 26961877 (+) True AMCG00014685
AMCG00014683 mRNA downstream 76615 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014690 mRNA downstream 87305 26977435 ~ 26980300 (+) True AMCG00014690
TU89430 other upstream 4030841 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 8612127 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 9438034 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 10417374 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10753685 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 945373 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 978573 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 1412243 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2961320 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3874221 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile