RNA id: AMCG00014868


Basic Information

Item Value
RNA id AMCG00014868
length 1335
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00014868
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37965377 ~ 37966906 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTCTCTGAGCTCTCAACTGGGCCTGGAGGACCTGGCCCCTCTGTGGGGGCTGGGGTCTCTGACGGCTGACTCCCTGGGTCCCCTCCTGGACCAAGAGCCTCTGGAGGGGGCACAGTCTCCCCCCtctgcctgctctctctctccctcttcctctccttcctcctcatcctccccctcttctctcttcGGCTGCCCCTCAGTGGGTAAGCCCGTCGATGACGATGATGTCCTGGCGCCCTTCCACTGGCTGTCTGCTGGCTCTCTGCTGGATGCCAATGCTGTGTATGGCAGCAAAGAGGATGCCTTCTCTGGCATGGATTGGATGGCAGAGAAGATCGACCTGAGCGAGTTTGACTTGGACTCCCTCATGGGCTCCTGTGAGTCTGACAGCCCCCCCAGCTCCCCCGAAGAGCTCCTGGCCTCGCTGGAGCAGCAcatggagctggagctggagctggaccTGCCCCTCCCTGACCCCCTGGCCCCGCCTCTCCTCCCCCAAGCCCTTGAAGATCTAGCTCCTGCAGCCACCTCCATCTCCCCCTCTGCCCTCCCAGAGCTGCTGCAATCGGAAGCCGAAATCCAGAGCGAGCCCGTACCCTCCTCACCTCCCTCTCCTTCGACTTCCCCCCCACCAGAGCCCACCTTCTCCCTGGACCTGGGCAGCGAGGTGGATGTGTCAGAGAGTGAACGACCTCTGGCTGAACCTACAGCTCCACCTGTTGCCTCCACTCCACTGCCAGCCTTCCCCCAGCTGACTGTGCTTGCCCTCTCCCCCTCACAGCTTGTCCTGCTCCTGCCCCCCACGGAGAAGGTGGCCCTCGCTACTACCCCTCCCCCCATCACCATCGCTGCCCAGGAGGAGTCGGACAGCGACAGCGGGGTGGGCTCTGGCTGGGGCTCCCCTACTCACAGCCTGGACCCTtcctccccttccccttcctccTCTCGAGCCAAACCCTACTCCTGTGCCGCCCACGAGGAGAAGAGGATGAAACGGAAGTCCCAAGCAGCAGCAGGGACCGAGATGACGGGCTCCTCTCCATCTGCGGCCCCAGCCCAGCCTCTCAAAGTGGTGCCGAAGCGGCTGAAGAAAATGGAGCAGAACAAGACCGCTGCTACTCGCTACCGGCAGAAGAAGCGGGCTGAGCAAGATGCCCTGAACGCCGAGTGCATGGAGCTAGAGGGGCGCAACCGGGTCCTGGGAGAGCGGGCTGAAGCCATCGCCAAGGAGATCCAGTACCTGCGCGACCTGCTGGAGGAGGTGCGCTCTGCCAAGAACCGGAAGAGCCGGGCAGCCGGAGGGGAGGGTGGGCCATTGTCACCCTGA

Function

GO: NA

KEGG:

id description
K04374 ATF4, CREB2; cyclic AMP-dependent transcription factor ATF-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92327 lncRNA upstream 32582 37932522 ~ 37932795 (+) True G73944
TU92322 lncRNA upstream 80689 37876261 ~ 37884688 (+) True G73939
TU92298 lncRNA upstream 144015 37821086 ~ 37821362 (+) True G73917
TU92294 lncRNA upstream 219190 37745983 ~ 37746187 (+) True G73914
TU92269 lncRNA upstream 256576 37708286 ~ 37708801 (+) True G73889
TU92477 lncRNA downstream 344570 38311476 ~ 38313617 (+) True G74067
TU92590 lncRNA downstream 682016 38648922 ~ 38649249 (+) True G74157
TU92592 lncRNA downstream 684491 38651397 ~ 38655398 (+) True G74159
TU92634 lncRNA downstream 744802 38711708 ~ 38712076 (+) True G74192
TU92637 lncRNA downstream 746759 38713665 ~ 38714115 (+) True G74195
AMCG00014869 mRNA upstream 8861 37954370 ~ 37956516 (+) True AMCG00014869
AMCG00014867 mRNA upstream 20625 37935591 ~ 37944752 (+) True AMCG00014867
AMCG00014870 mRNA upstream 60401 37901797 ~ 37904976 (+) True AMCG00014870
AMCG00014863 mRNA upstream 209529 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014864 mRNA upstream 210854 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014873 mRNA downstream 56683 38023589 ~ 38027260 (+) True AMCG00014873
AMCG00014872 mRNA downstream 106778 38073684 ~ 38088035 (+) True AMCG00014872
AMCG00014876 mRNA downstream 202963 38169869 ~ 38176166 (+) True AMCG00014876
AMCG00014877 mRNA downstream 210968 38177874 ~ 38180456 (+) True AMCG00014877
AMCG00014882 mRNA downstream 253615 38220521 ~ 38227829 (+) True AMCG00014882
TU92227 other upstream 446971 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 2570728 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 3004930 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 3184787 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 3725977 34238934 ~ 34239400 (+) True G73292
TU92541 other downstream 465468 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 843787 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 1369362 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 1639981 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 1898176 39865082 ~ 39872003 (+) False AMCG00014923

Expression Profile