RNA id: TU90507


Basic Information

Item Value
RNA id TU90507
length 515
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G72415
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29157025 ~ 29160425 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGTGTGAATTTGGTACACACTGTTATCACTGAGGAGAGATGtagctgtaattaaactgaCTTGCGTCTGACTTCACAATCCCAGAGGTGTTTGAATTTGCTGTGGTGTATTTGGGTGCTAGTGAAGCTGGCAGAGATCCGGGTGAGCTCAGCGCTCAGAGCTAACAGCAGTTCAACACGTACAGGAAGTAACAGTACATTTGCTATTTATCTTTCACATCCGTTCGTGCTAGAGGAGCCCTCCTGGTGTAGCCCGCTGTCAATCAGCCAGGTTAGCTCTCTAATGAAAGTGGGCCTGAACTCTCTTCAGGTCGATGATCTGTCTGTGTCCTCCATTCCTGCGAACCAGCGCTTGGCATGTGAATGCAGTCTGAGTTATGGGAAACTGCAACTCCAGGAAAAGgcACAGAAGATACAAAACAGGAGAAGGGACGGACAGTGACGATCAGAACAATGTAAGTGCAACTAATGCCCAGGCCAAATAcaaacttaataaataaatataaatatttc

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05310 Asthma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90496 lncRNA upstream 19672 29137129 ~ 29137353 (+) True G72409
TU90429 lncRNA upstream 165726 28989607 ~ 28991299 (+) True G72354
TU90428 lncRNA upstream 171449 28981122 ~ 28985576 (+) True G72353
TU90416 lncRNA upstream 235735 28918976 ~ 28921290 (+) True G72341
TU90400 lncRNA upstream 319115 28836282 ~ 28837910 (+) False AMCG00014729
TU90518 lncRNA downstream 31546 29191971 ~ 29192278 (+) True G72426
TU90536 lncRNA downstream 88821 29249246 ~ 29252705 (+) True AMCG00014739
TU90544 lncRNA downstream 107904 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA downstream 110426 29270851 ~ 29272518 (+) False AMCG00014738
TU90738 lncRNA downstream 683042 29843467 ~ 29846586 (+) True AMCG00014757
AMCG00014733 mRNA upstream 27983 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014734 mRNA upstream 46387 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014728 mRNA upstream 240391 28905901 ~ 28916634 (+) True AMCG00014728
AMCG00014727 mRNA upstream 266057 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014729 mRNA upstream 319116 28797049 ~ 28837909 (+) True AMCG00014729
AMCG00014739 mRNA downstream 87450 29247875 ~ 29256354 (+) False AMCG00014739
AMCG00014738 mRNA downstream 109213 29269638 ~ 29279149 (+) True AMCG00014738
AMCG00014737 mRNA downstream 147515 29307940 ~ 29321592 (+) True AMCG00014737
AMCG00014741 mRNA downstream 223063 29383488 ~ 29398221 (+) True AMCG00014741
AMCG00014740 mRNA downstream 240207 29400632 ~ 29421379 (+) True AMCG00014740
TU90214 other upstream 852952 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1277225 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1315154 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6301379 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10882665 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 691025 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1603926 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1817791 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1819145 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1829638 30990063 ~ 30996363 (+) True G72787

Expression Profile