RNA id: AMCG00015694


Basic Information

Item Value
RNA id AMCG00015694
length 3243
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00015694
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16592228 ~ 16611444 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAgaaattcaaagcattcaagGGAGATGCAAGTAAACTGACACCAGtggattattttgtgtattgtttaatacAGCTGCCAAGatttgatgTTCGTGTTGAAGCCATGGTTCTTAAGGAAGAATTCTTTCCATCCTGCTCTGCTGTGAATGTTGAAATTGAAGTTATTCGTATGGCTATAGAAGAACTGATGACATGTGAAGAGCTTCATGCTATTCTCCACTTAGTTCTTCAGGCTGGAAACCTCATGAATGCAGGAGGATACGCTGGCAATGCAGTAGGCTTCAAGCTGTCATCCTTACTGAAACTTGCGGATACAAAAGCCAACAAACCAGGGATGAACCTGTTGCACTTTGTTGCATTGGAAGCCCAGAAGAAGGATGAGACCCTGTTAAAATTTCCTGAAAAGTTGCAACATGTTCAAAGTGCAGTCAGAATCTCAATGGAAAATATTGAAGCAGAGTTCCAGTCCTTGTACACTAGAAGTAGCTCAGTAGAAGAAAAGATCCAGCAGGACACAGAGCTCCTGCAACAGCTGGAACACTTTCTACAGAGTTCAGTGAGGACCCTCCAAGATCTGAAGAAGCACCTCCTACAGCTGCGGAAGGAGGGAAActgtttaattgatttcttcTGTGAAGACAAAGAATCCTTTAAACTGGATGAGTGCTTTAGAATATTCCAGGATTTCTGCCTCAGGTTCAAAAAGGCTGTTAAGGATAATCTTGAGAGGGACCTGAAGGAGGCTGCCAGGCAGAAGCGGCTTCGGGAACTGGAGGAGAAGAGGCATTCTTGGGCAGGTGGGGATCAAGGCAGGGGTTTTGGTCGTAGTAGCAGTGAGAATGATGTGGAGATGCTAACCAAGGAGGGCCTCCTGGACTTCTTTCAGCACAAACCCCACAGCCCCCTGACCCGCTCTTCCAGTGTAAAGCGCTCCAGGCACTCAGTGGCTGCCATGGCTGACCGAGAGCTCTGCAGCTTCCTTGGGGGCTTGAGGTCAGAGGACTCCACCAAGTTTAACAGCCTTCCCAGGATCTCTAGGTGCCACTCCAGGAAAACCAACCCATGGATGGATTCCCCAAATGACAATCAGGAACTTGGTGTGAAATGCCACAACTTAGACAGGAAAGACAGTGTCACATTGAATGCAGACCAGGAAGATTTTTCACAAACTCCTGTGGTTGAGTTTAAAATTGGTTTGAATATAATGGAAGATCCACATGTCATTAATGGCAATACTACTGTTGTTTCAGAAAGTGGtgggataaataataataaccactacaaaaatgtttttgaaaagacTAACGGTACCAGTCATGAGCAAATGAATGTCAGTGTGTCAAGGCACACGTTGGTCCCTGGACTTCAGGTATTCAGTCTCATTACtcctattaataataacagtatgtACTTAGTGAACCAGGGAGATGTTTGTTTGGATAATTTGAAGATGGAAAAAGATACCCTAAAAAGTCCTGAAATTTTAGATATGGATACCCCTCCCTCTTCTAAGAGctccaaaacagaaaatgattcCAGAACAGAATCTGATTGTAAAatggaatctttacagtttaCAATCTCTTCTCAAAATGAAGAGGAAGGGGACATTAGCACTATTTCCTCAACGTGTGATATACATCTTCCTTTAGATGACTCTGCAACAAACAAGAAACCTATACTTTACATAATGGATTGTACAGAGACTGACCATTCTACATCCTTGGACTACTCTCAAATCCATGACAACCTTCCTGTTTTTAAGGAAGACAATAACTTTGGAAACCAAAATGTGCATACTAGTATGGACAATCTCAAAGACCCAAGTTCAATTTCTTCTAATTTGGAATCAGAATCCACTAATGAGGAGTCGGTTTCTGTTACTCAGTCTGCCACCACAGAGGAGAAAGCTTGTGATAGCTGTgggacaacaaaacaaaagaaaaatgagaaaatggTACAGGTCAACAGTAAAAAAACTGGGCCTAGGAAATCGAAGCAATCTTCAAAAATACCAGGTACTCGAAATAGTGGAACTGCCCATGGTGTAAGAACATTACCTGCCACAGAAAATCAAAAAATGCGAAAAGTGATGCCTATATCCAGACAGAGCAGGTCTGGCAACTCTGTAAAGACAACAGAGTCATCAGcctatgaaaagaaaaataaagaactgaGGCATCCACACCAGGATCAGAGCAATCCAGGGAGAAAGACTGAATACCACACAAGTACCTCTCAAAGCTCTAACGTTCCTGCAGAGAACCAAAAAGTTCACAAGGGCACACCATCCAGTACTAGTAACAATTGGCTTAGAGAACAAAACCCACGCACCCACTCAATCAGGAAGCCCAGTGCCAAACCCGTACGTAACATTCCTAAGCCCAAGCCAGAGGAGAAGATGTGCCGTTCCACTATGCGAGCCCTGGCTCAGGCACAAGGAGCAGCTGAAGGGAGCAGCTGCCAGACTCCCACTCATAGCAGCAAGCCCTTGTCTGGCACTCCCAGTTTTGCCCGTGGAACAGTTGCCTCTTCCTCTAGGAGGATGAAAAAAGACCTGACCACTAGTTCATACCCCTCATCGCCTTCTAACAGTGCCACTCCAACCAGAACTGGCTCCAAGAAGCAAACCGTGAAAGCCAACCCTAGTAACAGTGTGTTCCCTCCAAAGGATGAGGATATCGTCCAGGGCACATTAAAGAGAGCGCAGAGTGTCAAAGTCTCCAGCAAGAACTGGAATGGCAGTGAGATGCCGCCTCATAAGAGAGACCCGAGCAAAGGCAGCAGCTTTTCTGAAAAGTCAGTGGTCCAATCAAAAGACTTAAGCAAGTTAACTACAGAAAAAGCTCTAAAACCTATTTGGACACACAAGCCGAGGACACAGCCGCTGCCCTGGAGGCCTCTGCCCGTCCCTCAGgagccgtctctctctcccgcccTCACCTGCTGCCTGCTACTGTACCTGCTGGAGCGCAGTGTGGAGTCTGGGGGTCTGGACAACAACGCTACCCTCAGCACACACctcacagcagcagcaccaccacACTGGCCCTCTGTCTCAGCCTGCAGTGAAGCGACTGGCGCAGGACTGACTGCCCTgcaccacaacacacactgcttcTGCTCCACTCCCACCTGGACTGACCAGTTCCTCAGGATCACCTGCACAGACGTGGAGGAAACAAGGGTTCCAGCACAGGGAGGGGCAGCTGCAGTCTGTATGGGTATGAGTAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124629 lncRNA downstream 19952 16560585 ~ 16572276 (-) True G99758
TU124557 lncRNA downstream 64301 16503791 ~ 16527927 (-) True G99710
TU124602 lncRNA downstream 93697 16497485 ~ 16498531 (-) True G99735
TU124598 lncRNA downstream 119051 16470907 ~ 16473177 (-) True AMCG00015681
TU124575 lncRNA downstream 163602 16424750 ~ 16428626 (-) True G99724
TU124679 lncRNA upstream 103003 16714447 ~ 16714835 (-) True G99804
TU124692 lncRNA upstream 259198 16870642 ~ 16871119 (-) True G99816
TU124706 lncRNA upstream 390550 17001994 ~ 17004413 (-) True G99830
TU124745 lncRNA upstream 523483 17134927 ~ 17135183 (-) True G99860
TU124821 lncRNA upstream 1036607 17648051 ~ 17704580 (-) True G99923
AMCG00015696 mRNA downstream 1229 16581695 ~ 16590999 (-) True AMCG00015696
AMCG00015695 mRNA downstream 13018 16575258 ~ 16579210 (-) True AMCG00015695
AMCG00015690 mRNA downstream 45342 16536547 ~ 16546886 (-) True AMCG00015690
AMCG00015691 mRNA downstream 56938 16524114 ~ 16535290 (-) False AMCG00015691
AMCG00015681 mRNA downstream 121282 16467299 ~ 16470946 (-) False AMCG00015681
AMCG00015697 mRNA upstream 4169 16615613 ~ 16650920 (-) True AMCG00015697
AMCG00015693 mRNA upstream 39754 16651198 ~ 16677591 (-) True AMCG00015693
AMCG00015702 mRNA upstream 394678 17006122 ~ 17018382 (-) True AMCG00015702
AMCG00015704 mRNA upstream 516463 17127907 ~ 17131775 (-) True AMCG00015704
AMCG00015712 mRNA upstream 720208 17331652 ~ 17332731 (-) True AMCG00015712
TU124562 other downstream 56760 16529377 ~ 16535468 (-) True AMCG00015691
TU124478 other downstream 370073 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 489772 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 888938 15701078 ~ 15703290 (-) True AMCG00015666
TU124200 other downstream 1331744 15259461 ~ 15260484 (-) True G99454
TU124837 other upstream 1226136 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 2016899 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 3363512 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 3658385 20269829 ~ 20279644 (-) False AMCG00015761
TU126211 other upstream 8381509 24992953 ~ 25000890 (-) True G101067

Expression Profile