RNA id: TU124575


Basic Information

Item Value
RNA id TU124575
length 588
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G99724
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16424750 ~ 16428626 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgtgtctgtgtctgtgtctgtcccttTCCTCCTCTGATGTCCCTCAGTCTGTGTCCTCTGAAGACCAGGCTGTCTCTGTGCTGTTGTGCGTGgaggacacagagagacaggagacacacagagcaggACACCAGAACCTGGGACTTTACAGGAGCTGGACATGAGTCACAGACCGGCAGGGTCTCCACCACCACTTCTCCCACTCTCACTCCCTTTNNNNctcgTCGAGGGTCCCTCAGCTCCTCCACTATGTGATCCAGGCTGTGGTTCTTCTTGAGTGATGGCTGGTGCCTGAAAGTCTCTCTGCACTGGGGACAGGTTGCCCCATTCCCACTTCCACTCCAGTATTGCCGGATGCAGTGGCGGCAGAAGTTGTGTCCACAGGGCAGGGTGACCGGGTCAGTGTAGAGGTCAAGACACACCACACAACGCAGCATCTCCTCCAGAACACACTGGTCACGCGGCAGGGTGGCCATGGCCaaggtgtgtctgtctgtgctgttgCTGTGGTTGTTGTGTGACTGTGGTTGGGTCAGGTTTTGATGGTCAGGTTTGTATTGTTCATTGGGTATTCAACTTGGTTGCCC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124513 lncRNA downstream 112780 16311708 ~ 16311970 (-) True G99679
TU124452 lncRNA downstream 294455 16130064 ~ 16130295 (-) True G99623
TU124443 lncRNA downstream 356621 16060196 ~ 16068129 (-) True G99614
TU124406 lncRNA downstream 420720 15999802 ~ 16004030 (-) False G99596
TU124405 lncRNA downstream 420720 16001183 ~ 16004030 (-) True G99596
TU124598 lncRNA upstream 42281 16470907 ~ 16473177 (-) True AMCG00015681
TU124602 lncRNA upstream 68859 16497485 ~ 16498531 (-) True G99735
TU124557 lncRNA upstream 75165 16503791 ~ 16527927 (-) True G99710
TU124629 lncRNA upstream 131959 16560585 ~ 16572276 (-) True G99758
TU124647 lncRNA upstream 163719 16592345 ~ 16593507 (-) False AMCG00015694
AMCG00015677 mRNA downstream 100223 16315488 ~ 16324527 (-) True AMCG00015677
AMCG00015676 mRNA downstream 152103 16252419 ~ 16272647 (-) True AMCG00015676
AMCG00015672 mRNA downstream 364749 16057802 ~ 16060001 (-) True AMCG00015672
AMCG00015667 mRNA downstream 610391 15792513 ~ 15814359 (-) True AMCG00015667
AMCG00015666 mRNA downstream 721629 15687642 ~ 15703121 (-) False AMCG00015666
AMCG00015680 mRNA upstream 17346 16445972 ~ 16448187 (-) True AMCG00015680
AMCG00015683 mRNA upstream 32096 16460722 ~ 16463940 (-) True AMCG00015683
AMCG00015681 mRNA upstream 38673 16467299 ~ 16470946 (-) False AMCG00015681
AMCG00015691 mRNA upstream 95488 16524114 ~ 16535290 (-) False AMCG00015691
AMCG00015690 mRNA upstream 107921 16536547 ~ 16546886 (-) True AMCG00015690
TU124478 other downstream 202595 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 322294 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 721460 15701078 ~ 15703290 (-) True AMCG00015666
TU124200 other downstream 1164266 15259461 ~ 15260484 (-) True G99454
TU124175 other downstream 1253078 15170615 ~ 15171672 (-) False AMCG00015659
TU124562 other upstream 100751 16529377 ~ 16535468 (-) True AMCG00015691
TU124837 other upstream 1408954 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 2199717 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 3546330 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 3841203 20269829 ~ 20279644 (-) False AMCG00015761

Expression Profile